POPTR_0010s13980 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0010s13980 T295289_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.969 0.632
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.969 0.632
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.965 0.623
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.963 0.614
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.956 0.588
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.956 0.588
PK11990.1
M01290_2.00 		Cannabis sativa
DNAHDNHDNN
NNHDNHDTNH		 PBM
Lambert et al.(2019)
pTH11336 		0.873 0.570
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s13980.1 NAC/NAM 58 196
POPTR_0010s13980.2 NAC/NAM 58 196
POPTR_0010s13980.3 NAC/NAM 58 196

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

354 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_08366 Aegilops tauschii F775_08366 N 0.000
BRADI2G14790 Brachypodium distachyon BRADI2G14790 N 0.000
Ca_03953 Cicer arietinum Ca_03953 N 0.000
Cla004302 Citrullus lanatus Cla004302 N 0.000
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.000
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.000
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.000
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.000
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.000
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.000
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.000
mgf006107m Mimulus guttatus mgf006107m N 0.000
mgf001401m Mimulus guttatus mgf001401m N 0.000
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.000
OBART05G27520 Oryza barthii OBART05G27520 N 0.000
OB05G35020 Oryza brachyantha OB05G35020 N 0.000
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.000
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.000
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.000
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.000
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.000
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.000
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.000
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.000
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.000
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.000
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.000
Si021904m.g Setaria italica Si021904m.g N 0.000
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.000
TCM_015349 Theobroma cacao TCM_015349 N 0.000
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.000
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.000
SIGE Vitis vinifera VIT_16s0050g02520 N 0.000