POPTR_0011s15230 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0011s15230 T295302_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NTL9
M02371_2.00 		Arabidopsis thaliana
ATTACTTAA
TTAAGTAAT		 PBM
Weirauch et al.(2014)
pTH8207 		0.922 0.851
NTL9
M11081_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBNAC_01 		0.922 0.851
NTL9
M11082_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBNAC_02 		0.922 0.851
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s15230.1 NAC/NAM 11 142
POPTR_0011s15230.2 NAC/NAM 11 142
POPTR_0011s15230.3 NAC/NAM 11 142
POPTR_0011s15230.4 NAC/NAM 11 142

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I 0.899
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I 0.930
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I 0.923
ANAC014 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002639 I 0.944
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I 0.922
NAC014 Arabidopsis thaliana AT1G33060 I 0.945
NTL9 Arabidopsis thaliana AT4G35580 D 0.922
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I 0.943
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I 0.922
Bo5g086780 Brassica oleracea Bo5g086780 I 0.945
Bra010193 Brassica rapa Bra010193 I 0.945
PK02019.1 Cannabis sativa PK02019.1 I 0.959
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I 0.922
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I 0.943
Carubv10008529m.g Capsella rubella Carubv10008529m.g I 0.943
Carubv10007613m.g Capsella rubella Carubv10007613m.g I 0.922
evm.TU.supercontig_37.112 Carica papaya evm.TU.supercontig_37.112 I 0.951
Cla016588 Citrullus lanatus Cla016588 N 0.883
Cla002432 Citrullus lanatus Cla002432 N 0.882
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I 0.948
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I 0.948
Cucsa.273280 Cucumis sativus Cucsa.273280 N 0.882
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I 0.964
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I 0.945
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I 0.945
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.883
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I 0.955
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I 0.927
Lus10033251.g Linum usitatissimum Lus10033251.g I 0.969
Lus10010148.g Linum usitatissimum Lus10010148.g I 0.948
Lus10008285.g Linum usitatissimum Lus10008285.g I 0.969
MDP0000146969 Malus domestica MDP0000146969 I 0.879
MDP0000169485 Malus domestica MDP0000169485 I 0.879
MDP0000266908 Malus domestica MDP0000266908 I 0.953
MDP0000658409 Malus domestica MDP0000658409 I 0.948
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.884
mgf022344m Mimulus guttatus mgf022344m I 0.949
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I 0.966
Pm029581 Prunus mume Pm029581 I 0.958
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I 0.958
30068.m002619 Ricinus communis 30068.m002619 I 0.955
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I 0.952
SapurV1A.0666s0060 Salix purpurea SapurV1A.0666s0060 N 0.915
TCM_036587 Theobroma cacao TCM_036587 I 0.877
TCM_015584 Theobroma cacao TCM_015584 I 0.954
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I 0.950
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I 0.897
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.904