CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0015s00640
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0015s00640
T295332_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0015s00640.1
NAC/NAM
12
138
PLGFRFRPSDKELVDYYLRLKINGDDDGVKVIREIDVCKWEPWDLPDLSIIKNKDPEWFFFCPLDRKYPNGSRQNRATNAGYWKATGNDRKIKSGNNLIGMKKTLVFYTGRAPKGKRTNWVMHEYRA
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g109540
Brassica oleracea
Bo3g109540
I
0.884
evm.TU.supercontig_3.170
Carica papaya
evm.TU.supercontig_3.170
N
0.903
Cla002432
Citrullus lanatus
Cla002432
N
0.882
Cucsa.273280
Cucumis sativus
Cucsa.273280
N
0.885
Lus10015587.g
Linum usitatissimum
Lus10015587.g
I
0.898
Lus10032919.g
Linum usitatissimum
Lus10032919.g
I
0.913
cassava11768.valid.m1
Manihot esculenta
cassava11768.valid.m1
N
0.945
POPTR_0012s00760
Populus trichocarpa
POPTR_0012s00760
N
0.915
29764.m000758
Ricinus communis
29764.m000758
N
0.931
SapurV1A.0326s0320
Salix purpurea
SapurV1A.0326s0320
N
0.936
SapurV1A.0662s0040
Salix purpurea
SapurV1A.0662s0040
N
0.906
SapurV1A.0666s0060
Salix purpurea
SapurV1A.0666s0060
N
0.884
SapurV1A.2735s0030
Salix purpurea
SapurV1A.2735s0030
N
0.906