Cagra.1822s0012 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.1822s0012 T297400_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.994 0.991
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.994 0.991
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.973 0.746
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.973 0.746
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.972 0.746
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.972 0.746
PK11990.1
M01290_2.00 		Cannabis sativa
DNAHDNHDNN
NNHDNHDTNH		 PBM
Lambert et al.(2019)
pTH11336 		0.948 0.816
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1822s0012.1.p NAC/NAM 78 217

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.000
PK20225.1 Cannabis sativa PK20225.1 D 0.000
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.000
Ca_06386 Cicer arietinum Ca_06386 I 0.000
Cla013743 Citrullus lanatus Cla013743 I 0.000
Cla019977 Citrullus lanatus Cla019977 I 0.000
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I 0.000
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.000
Cucsa.200860 Cucumis sativus Cucsa.200860 I 0.000
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.000
Eucgr.D00509 Eucalyptus grandis Eucgr.D00509 I 0.000
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.000
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.000
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.000
GLYMA12G33751 Glycine max GLYMA12G33751 I 0.000
GLYMA13G36741 Glycine max GLYMA13G36741 I 0.000
GLYMA02G15780 Glycine max GLYMA02G15780 I 0.000
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.000
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.000
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.000
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.000
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.000
Lus10013917.g Linum usitatissimum Lus10013917.g I 0.000
MDP0000249969 Malus domestica MDP0000249969 I 0.000
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.000
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.000
MTR_2g015890 Medicago truncatula MTR_2g015890 I 0.000
MTR_4g087920 Medicago truncatula MTR_4g087920 I 0.000
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
OB01G17480 Oryza brachyantha OB01G17480 I 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.000
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.000
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
OS01G0218100 Oryza sativa OS01G0218100 I 0.000
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I 0.000
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.000
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.000
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
29900.m001610 Ricinus communis 29900.m001610 I 0.000
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.000
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.000
Si002517m.g Setaria italica Si002517m.g I 0.000
Si002655m.g Setaria italica Si002655m.g I 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.000
TCM_029711 Theobroma cacao TCM_029711 I 0.000
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.000
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.000
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.000
GRMZM2G016039 Zea mays GRMZM2G016039 I 0.000