Carubv10003768m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10003768m.g T297464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.905 0.763
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.905 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003768m NAC/NAM 26 213

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23221 Aegilops tauschii F775_23221 N 0.000
MLOC_10707 Hordeum vulgare MLOC_10707 N 0.000
LPERR06G04380 Leersia perrieri LPERR06G04380 N 0.000
LPERR10G06550 Leersia perrieri LPERR10G06550 N 0.000
OBART06G04880 Oryza barthii OBART06G04880 N 0.000
OB06G14480 Oryza brachyantha OB06G14480 N 0.000
ORGLA06G0044400 Oryza glaberrima ORGLA06G0044400 N 0.000
ONIVA06G15050 Oryza nivara ONIVA06G15050 N 0.000
OPUNC06G04630 Oryza punctata OPUNC06G04630 N 0.000
ORUFI06G04910 Oryza rufipogon ORUFI06G04910 N 0.000
Pavir.Ca01208 Panicum virgatum Pavir.Ca01208 N 0.000
Traes_1AL_FF8F7A939 Triticum aestivum Traes_1AL_FF8F7A939 N 0.000