Carubv10003768m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10003768m.g T297464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.905 0.763
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.905 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003768m NAC/NAM 26 213

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D 0.905
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.905
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.905
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.905
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.905
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.905
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.904
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.901
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.901
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.901
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.901
Bo1g143840 Brassica oleracea Bo1g143840 I 0.889
Bra034119 Brassica rapa Bra034119 I 0.889
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I 0.888
ANAC052 Arabidopsis thaliana AT3G10490 I 0.887
Bo1g143850 Brassica oleracea Bo1g143850 I 0.884
Bra034118 Brassica rapa Bra034118 I 0.884
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.882
Bo5g137360 Brassica oleracea Bo5g137360 I 0.875
Bra029844 Brassica rapa Bra029844 I 0.875
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.875
F775_27564 Aegilops tauschii F775_27564 I 0.874
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.874
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.874
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.874
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.873
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.873