CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10000612m.g
(
Citrus clementina
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Ciclev10000612m.g
T297559_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.882
0.673
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.882
0.673
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10000612m
NAC/NAM
10
136
PPGFRFHPTDEELVLFYLKRKICKKKIKFDIISETDVYKWDPEELPGQSLLKSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRNVTCHSRNVGVKKTLVFYRGRAPTGERTDWVMHEYTL
Ciclev10000870m
NAC/NAM
10
136
PPGFRFHPTDEELVLFYLKRKICKKKIKFDIISETDVYKWDPEELPGQSLLKSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRNVTCHSRNVGVKKTLVFYRGRAPTGERTDWVMHEYTL
Ciclev10000936m
NAC/NAM
10
136
PPGFRFHPTDEELVLFYLKRKICKKKIKFDIISETDVYKWDPEELPGQSLLKSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRNVTCHSRNVGVKKTLVFYRGRAPTGERTDWVMHEYTL
Links
Other
NAC/NAM
family TFs
Other
Citrus clementina
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy