Ciclev10000612m.g (Citrus clementina)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Ciclev10000612m.g T297559_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac028
M01289_2.00 		Arabidopsis thaliana
NTTGCGTRH
DYACGCAAN		 PBM
Lambert et al.(2019)
pTH9962 		0.882 0.673
anac028
M07179_2.00 		Arabidopsis thaliana
CTTSHNNHDCAMGYWA
TWRCKTGHDNNDSAAG		 Dap-seq
OMalley et al.(2016)
ANAC028_col_a 		0.882 0.673
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000612m NAC/NAM 10 136
Ciclev10000870m NAC/NAM 10 136
Ciclev10000936m NAC/NAM 10 136

Links

Other NAC/NAM family TFs
Other Citrus clementina TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.966
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.956
MDP0000852271 Malus domestica MDP0000852271 I 0.955
Pm022358 Prunus mume Pm022358 N 0.953
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.953
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.951
Ca_04337 Cicer arietinum Ca_04337 N 0.951
GLYMA10G36360 Glycine max GLYMA10G36360 N 0.951
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.948
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.946
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.943
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.943
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.942
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.942
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.941
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.941
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.939
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.938
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.937
Cla013854 Citrullus lanatus Cla013854 I 0.935
TCM_036587 Theobroma cacao TCM_036587 I 0.935
MDP0000146969 Malus domestica MDP0000146969 I 0.932
MDP0000169485 Malus domestica MDP0000169485 I 0.932
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.931
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.929
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.924
Cla016588 Citrullus lanatus Cla016588 N 0.913
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.895
Bra039745 Brassica rapa Bra039745 I 0.885
Bo2g052630 Brassica oleracea Bo2g052630 I 0.885
Thhalv10018275m.g Eutrema salsugineum Thhalv10018275m.g I 0.885
Cagra.11446s0003 Capsella grandiflora Cagra.11446s0003 I 0.885
Carubv10021788m.g Capsella rubella Carubv10021788m.g I 0.885
Bostr.26959s0323 Boechera stricta Bostr.26959s0323 I 0.885
mg018130m Mimulus guttatus mg018130m I 0.884
anac028 Arabidopsis thaliana AT1G65910 D 0.882
anac028 Arabidopsis lyrata Al_scaffold_0002_1137 I 0.882
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.879
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.878
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.877
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.877