CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10008897.g
(
Linum usitatissimum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Lus10008897.g
T298229_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC035
M07186_2.00
Arabidopsis thaliana
CBTNNNNNDYACGKMAHHN
NDDTKMCGTRHNNNNNAVG
Dap-seq
OMalley et al.(2016)
ANAC034_col
0.950
0.912
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10008897
NAC/NAM
24
149
MPGFRFHPTEEELIQFYLRRKVEGKPFNVELITFLDLYRYDPWHLPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSSSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL
Links
Other
NAC/NAM
family TFs
Other
Linum usitatissimum
TFs
120 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ALNC14_114790
Albugo laibachii
ALNC14_114790
N
0.000
fgenesh1_pg.C_scaffold_26000008
Phytophthora capsici
fgenesh1_pg.C_scaffold_26000008
N
0.000
PITG_19361
Phytophthora infestans
PITG_19361
N
0.000
fgenesh_scip_prom.46568.8839
Phytophthora kernoviae
fgenesh_scip_prom.46568.8839
N
0.000
fgenesh_scip_prom.28083.12017
Phytophthora lateralis
fgenesh_scip_prom.28083.12017
N
0.000
F443_03223
Phytophthora parasitica
F443_03223
N
0.000
Phyra73306
Phytophthora ramorum
Phyra73306
N
0.000
Physo131313
Phytophthora sojae
Physo131313
N
0.000
maker-pag1_scaffold_151-fgenesh-gene-0.9
Pythium aphanidermatum
maker-pag1_scaffold_151-fgenesh-gene-0.9
N
0.000
maker-par_contig_173-fgenesh-gene-0.4
Pythium arrhenomanes
maker-par_contig_173-fgenesh-gene-0.4
N
0.000
fgenesh_masked-pir_contig_142-abinit-gene-0.47
Pythium irregulare
fgenesh_masked-pir_contig_142-abinit-gene-0.47
N
0.000
maker-piw_contig_3307-fgenesh-gene-0.1
Pythium iwayamai
maker-piw_contig_3307-fgenesh-gene-0.1
N
0.000
PYU1_G003105
Pythium ultimum
PYU1_G003105
N
0.000
maker-pve_contig_603-snap-gene-0.9
Pythium vexans
maker-pve_contig_603-snap-gene-0.9
N
0.000