CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PGR *(Callithrix jacchus)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00105 (zf-C4)	IPR001628	ENSCJAG00000000583	T302698_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PGR M03923_2.00	Homo sapiens	DGNACANNNYGTNCY	RGNACRNNNTGTNCH	SELEX Nitta et al.(2015) PGR_1	0.993	1.000
PGR M09266_2.00	Homo sapiens	RGNACWBYBTGTNCYN	NRGNACAVRVWGTNCY	Misc Kulakovskiy et al.(2013) PRGR_HUMAN.H11MO.0.A	0.993	1.000
Pgr M09326_2.00	Mus musculus	RGNACWBYNTGTNCY	RGNACANRVWGTNCY	Misc Kulakovskiy et al.(2013) PRGR_MOUSE.H11MO.0.A	0.993	1.000
PGR M09603_2.00	Homo sapiens	RNACWNNNWGTNCHN	NDGNACWNNNWGTNY	Misc Heinz et al.(2010) T47D-PR_GSE31130	0.993	1.000
PGR M11095_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_01	0.993	1.000
PGR M11096_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_02	0.993	1.000
PGR M11097_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PR_Q6	0.287	1.000
NR3C2 M02395_2.00	Homo sapiens	NNRGDACAN	NTGTHCYNN	PBM Weirauch et al.(2014) pTH5924	0.990	0.900
NR3C2 M03382_2.00	Homo sapiens	NRGDACAHDRTGTHCYN	NRGDACAYHDTGTHCYN	SELEX Jolma et al.(2013) NR3C2_1	0.990	0.900
NR3C2 M05637_2.00	Homo sapiens	NGNACRNNNYGTNCN	NGNACRNNNYGTNCN	SELEX Yin et al.(2017) NR3C2_eDBD_HT-SELEX	0.990	0.900
NR3C2 M05638_2.00	Homo sapiens	NGNACRNNVYGTNCN	NGNACRBNNYGTNCN	SELEX Yin et al.(2017) NR3C2_eDBD_Methyl-HT-SELEX	0.990	0.900
Nr3c1 M05886_2.00	Mus musculus	DGDACDBYNTGTNCY	RGNACANRVHGTHCH	SMiLE-seq Isakova et al.(2017) GR	0.989	0.886
Nr3c1 M09318_2.00	Mus musculus	RGNACABYNTGTNCY	RGNACANRVTGTNCY	Misc Kulakovskiy et al.(2013) GCR_MOUSE.H11MO.0.A	0.989	0.886
Nr3c1 M09614_2.00	Mus musculus	NRGDACABNNTGTNC	GNACANNVTGTHCYN	Misc Heinz et al.(2010) RAW264.7-GRE_Unpublished	0.989	0.886
NR3C1 M03366_2.00	Homo sapiens	NRGWACAYNRTGTWCYH	DRGWACAYNRTGTWCYN	SELEX Jolma et al.(2013) NR3C1_1	0.984	0.843
NR3C1 M05587_2.00	Homo sapiens	RGDACAYWDTGTHCY	RGDACAHWRTGTHCY	SELEX Yin et al.(2017) NR3C1_eDBD_HT-SELEX	0.984	0.843
NR3C1 M07986_2.00	Homo sapiens	DGNACABYBTGTNC	GNACAVRVTGTNCH	ChIP-seq Gerstein et al.(2012) A549_GR_HudsonAlpha	0.984	0.843
NR3C1 M07987_2.00	Homo sapiens	NNNNRGNACAYBBTGTHCYNN	NNRGDACAVVRTGTNCYNNNN	ChIP-seq Gerstein et al.(2012) ECC-1_GR_HudsonAlpha	0.984	0.843
NR3C1 M09270_2.00	Homo sapiens	DGNACABKNTGTNCY	RGNACANMVTGTNCH	Misc Kulakovskiy et al.(2013) GCR_HUMAN.H11MO.0.A	0.984	0.843
NR3C1 M09607_2.00	Homo sapiens	NRGNACABNVTGTNCY	RGNACABNVTGTNCYN	Misc Heinz et al.(2010) A549-GR_GSE32465	0.984	0.843
NR3C1 M11119_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_01	0.984	0.843
NR3C1 M11120_2.00	Homo sapiens	KKYACMRDVTGTYCTK	MAGRACABHYKGTRMM	Transfac Matys et al.(2006) V$GRE_C	0.984	0.843
NR3C1 M11121_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q4	0.984	0.843
NR3C1 M11122_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q6_01	0.984	0.843
NR3C1 M11123_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GR_Q6_02	0.984	0.843
NR3C1 M11124_2.00	Homo sapiens	NNWGVACANWDNNDNBHNN	NNDVNHNNHWNTGTBCWNN	Transfac Matys et al.(2006) V$GR_Q6	0.984	0.843
NR3C1 M11125_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NR3C1_04	0.984	0.843
NR3C1 M05588_2.00	Homo sapiens	RGDACANDRYGTHCY	RGDACRYHNTGTHCY	SELEX Yin et al.(2017) NR3C1_eDBD_Methyl-HT-SELEX	0.984	0.843
Ar M00821_2.00	Mus musculus	NRRGAACAYN	NRTGTTCYYN	PBM Weirauch et al.(2013) pTH1739	0.977	0.800
AR M03389_2.00	Homo sapiens	DRGWACRHVDYGTWCCY	RGGWACRHBDYGTWCYH	SELEX Jolma et al.(2013) AR_1	0.977	0.800
AR M03390_2.00	Homo sapiens	DRGWACAYNRTGTWCYY	RRGWACAYNRTGTWCYH	SELEX Jolma et al.(2013) AR_2	0.977	0.800
Ar M03436_2.00	Mus musculus	NRGHACAYNVYGTWCYN	NRGWACRBNRTGTDCYN	SELEX Jolma et al.(2013) Ar_1	0.977	0.800
AR M09288_2.00	Homo sapiens	DRYAAAYADNNNRGNACA	TGTNCYNNNHTRTTTRYH	Misc Kulakovskiy et al.(2013) ANDR_HUMAN.H11MO.0.A	0.977	0.800
Ar M09331_2.00	Mus musculus	NRGNACABRVTGTNCY	RGNACABYVTGTNCYN	Misc Kulakovskiy et al.(2013) ANDR_MOUSE.H11MO.0.A	0.977	0.800
AR M09610_2.00	Homo sapiens	NRGNACABNVTGTNCY	RGNACABNVTGTNCYN	Misc Heinz et al.(2010) LNCAP-AR_GSE27824	0.977	0.800
AR M09609_2.00	Homo sapiens	SHDRGVACAS	STGTBCYHDS	Misc Heinz et al.(2010) LNCaP-AR_GSE27824	0.977	0.800
AR M11157_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_01	0.977	0.800
AR M11158_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_02	0.977	0.800
AR M11159_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_03	0.977	0.800
AR M11160_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_04	0.977	0.800
AR M11161_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_11	0.977	0.800
AR M11162_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_13	0.977	0.800
AR M11163_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_14_H	0.977	0.800
AR M11164_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q2	0.977	0.800
AR M11165_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q6_01	0.977	0.800
AR M11166_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AR_Q6	0.977	0.800
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCJAP00000001012	Nuclear receptor	567	636	KICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVL
ENSCJAP00000001019	Nuclear receptor	567	610	KICLICGDEASGCHYGVLTCGSCKVFFKRAMEGRKFKKFNKVRV
ENSCJAP00000001020	Nuclear receptor	567	636	KICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVL
ENSCJAP00000001023	Nuclear receptor	560	629	KICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVL
ENSCJAP00000001024	Nuclear receptor	1	40	MEGQHNYLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVL

Links
Other Nuclear receptor family TFs
Other *Callithrix jacchus* TFs

276 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_005_00374	Aquilegia coerulea	Aquca_005_00374	N
Aquca_013_00314	Aquilegia coerulea	Aquca_013_00314	N
Aquca_017_00101	Aquilegia coerulea	Aquca_017_00101	N
Aquca_047_00092	Aquilegia coerulea	Aquca_047_00092	N
Aquca_056_00046	Aquilegia coerulea	Aquca_056_00046	N
Cla011742	Citrullus lanatus	Cla011742	I

PGR (Callithrix jacchus) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

276 Related TFs

PGR **(Callithrix jacchus)
Nuclear receptor**