CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLACG00000010606
(
Latimeria chalumnae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSLACG00000010606
T303491_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nr4a2
M00818_2.00
Mus musculus
AAAGGTCA
TGACCTTT
PBM
Weirauch et al.(2013)
pTH3467
0.994
1.000
NR4A2
M03383_2.00
Homo sapiens
AGGTCAHNNNDTGACCT
AGGTCAHNNNDTGACCT
SELEX
Jolma et al.(2013)
NR4A2_1
0.994
1.000
NR4A2
M03384_2.00
Homo sapiens
TGACCTTTAAAGGTCA
TGACCTTTAAAGGTCA
SELEX
Jolma et al.(2013)
NR4A2_2
0.994
1.000
NR4A2
M03385_2.00
Homo sapiens
NBTAAAGGTCA
TGACCTTTAVN
SELEX
Jolma et al.(2013)
NR4A2_3
0.994
1.000
NR4A2
M05639_2.00
Homo sapiens
NWAAKGTCAN
NTGACMTTWN
SELEX
Yin et al.(2017)
NR4A2_eDBD_HT-SELEX
0.994
1.000
NR4A2
M05881_2.00
Homo sapiens
NAAAKGTYA
TRACMTTTN
SMiLE-seq
Isakova et al.(2017)
NR4A2
0.994
1.000
NR4A2
M09286_2.00
Homo sapiens
RAAGGTCAV
BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_HUMAN.H11MO.0.C
0.994
1.000
Nr4a2
M09323_2.00
Mus musculus
RAAGGTCAV
BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_MOUSE.H11MO.0.C
0.994
1.000
NR4A2
M11151_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3_01
0.994
1.000
NR4A2
M11152_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3
0.994
1.000
NR4A2
M08461_2.00
Homo sapiens
RAGGTCAM
KTGACCTY
COMPILED
Mathelier et al.(2014)
MA0160.1
0.994
1.000
NR4A2
M05640_2.00
Homo sapiens
NAAAGGTCRN
NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A2_eDBD_Methyl-HT-SELEX
0.994
1.000
NR4A1
M05601_2.00
Homo sapiens
NAAAGGTCAN
NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_1
0.986
0.929
NR4A1
M05602_2.00
Homo sapiens
NAAAGGTCAN
NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_2
0.986
0.929
NR4A1
M08153_2.00
Homo sapiens
NAAAGGTCAN
NTGACCTTTN
ChIP-seq
Mathelier et al.(2014)
MA1112.1
0.986
0.929
NR4A1
M09274_2.00
Homo sapiens
AAAKGBCAN
NTGVCMTTT
Misc
Kulakovskiy et al.(2013)
NR4A1_HUMAN.H11MO.0.A
0.986
0.929
NR4A1
M09608_2.00
Homo sapiens
NNDNAAAGGTCA
TGACCTTTNHNN
Misc
Heinz et al.(2010)
K562-NR4A1_GSE31363
0.986
0.929
NR4A1
M11132_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_01
0.986
0.929
NR4A1
M11133_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_02
0.986
0.929
NR4A1
M11134_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5
0.986
0.929
NR4A1
M05603_2.00
Homo sapiens
NAAAGGTCRN
NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_1
0.986
0.929
NR4A1
M05604_2.00
Homo sapiens
NAAAGGTCRN
NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_2
0.986
0.929
Nr4a1
M09317_2.00
Mus musculus
NRAADGKCA
TGMCHTTYN
Misc
Kulakovskiy et al.(2013)
NR4A1_MOUSE.H11MO.0.B
0.986
0.914
Hr38
M03939_2.00
Drosophila melanogaster
NAAAGGTCA
TGACCTTTN
SELEX
Nitta et al.(2015)
Hr38_1
0.983
0.900
nhr-6
M01298_2.00
Caenorhabditis elegans
AAAKGTCA
TGACMTTT
PBM
Lambert et al.(2019)
pTH9944
0.955
0.757
Hr4
M06435_2.00
Drosophila melanogaster
AAGGTCA
TGACCTT
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
0.880
0.571
Q95WG3_ACRMI
M02424_2.00
Acropora millepora
NRAGGTCAN
NTGACCTYN
PBM
Weirauch et al.(2014)
pTH6144
0.864
0.643
usp
M03934_2.00
Drosophila melanogaster
ARRGGTCAAAGGTCA
TGACCTTTGACCYYT
SELEX
Nitta et al.(2015)
usp_1
0.862
0.643
usp
M06426_2.00
Drosophila melanogaster
HRRGGTCAH
DTGACCYYD
B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964
0.862
0.643
usp
M02709_2.00
Drosophila melanogaster
GGGGTCACSN
NSGTGACCCC
SELEX
Mathelier et al.(2014)
MA0016.1
0.862
0.643
usp
M09689_2.00
Drosophila melanogaster
KRGGTCACG
CGTGACCYM
Misc
Kulakovskiy et al.(2009)
usp
0.862
0.643
usp
M11191_2.00
Drosophila melanogaster
GRGGTCAYS
SRTGACCYC
Transfac
Matys et al.(2006)
I$CF1_01
0.862
0.643
usp
M11192_2.00
Drosophila melanogaster
GGGGTCAYS
SRTGACCCC
Transfac
Matys et al.(2006)
I$CF1_02
0.862
0.643
Rxrb
M02402_2.00
Mus musculus
VRGGTCAH
DTGACCYB
PBM
Weirauch et al.(2014)
pTH2861
0.861
0.657
RXRB
M03415_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRB_1
0.861
0.657
Rxrb
M03435_2.00
Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
Rxrb_1
0.861
0.657
RXRB
M05681_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1
0.861
0.657
RXRB
M05682_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2
0.861
0.657
RXRB
M09297_2.00
Homo sapiens
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C
0.861
0.657
Rxrb
M09330_2.00
Mus musculus
DSAGGTCASD
HSTGACCTSH
Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C
0.861
0.657
RXRB
M05683_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1
0.861
0.657
RXRB
M05684_2.00
Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2
0.861
0.657
Rxra
M00181_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Badis et al.(2009)
Rxra_1035
0.858
0.643
RXRA
M03408_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_1
0.858
0.643
RXRA
M03409_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_2
0.858
0.643
RXRA
M03410_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRA_3
0.858
0.643
RXRA
M03411_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRA_4
0.858
0.643
Rxra
M03421_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Rxra_1
0.858
0.643
Rxra
M03422_2.00
Mus musculus
RGGTCATGACCY
RGGTCATGACCY
SELEX
Jolma et al.(2013)
Rxra_2
0.858
0.643
RXRA
M05671_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
0.858
0.643
RXRA
M05882_2.00
Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB
SMiLE-seq
Isakova et al.(2017)
RXRa
0.858
0.643
RXRA
M07993_2.00
Homo sapiens
NRRGGTCA
TGACCYYN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
0.858
0.643
RXRA
M07994_2.00
Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
0.858
0.643
RXRA
M09294_2.00
Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
0.858
0.643
Rxra
M09306_2.00
Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
0.858
0.643
RXRA
M11182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RXRA_07
0.858
0.643
RXRA
M05672_2.00
Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
0.858
0.643
Rxrg
M02400_2.00
Mus musculus
VRGGTCAN
NTGACCYB
PBM
Weirauch et al.(2014)
pTH2880
0.853
0.614
RXRG
M03375_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
RXRG_1
0.853
0.614
RXRG
M03376_2.00
Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY
SELEX
Jolma et al.(2013)
RXRG_2
0.853
0.614
RXRG
M03377_2.00
Homo sapiens
GRGGTCAAAGGTCA
TGACCTTTGACCYC
SELEX
Jolma et al.(2013)
RXRG_3
0.853
0.614
RXRG
M03378_2.00
Homo sapiens
NRGGTCATGACCYC
GRGGTCATGACCYN
SELEX
Jolma et al.(2013)
RXRG_4
0.853
0.614
RXRG
M02746_2.00
Homo sapiens
GGTCAAAGGTCA
TGACCTTTGACC
SELEX
Jolma et al.(2010)
RXRG_dimer
0.853
0.614
RXRG
M05615_2.00
Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1
0.853
0.614
RXRG
M05616_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2
0.853
0.614
RXRG
M05879_2.00
Homo sapiens
RGGTBAARGGTBRND
HNYVACCYTTVACCY
SMiLE-seq
Isakova et al.(2017)
RXRg
0.853
0.614
RXRG
M09280_2.00
Homo sapiens
NGTCAAAGGTCAH
DTGACCTTTGACN
Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B
0.853
0.614
Rxrg
M09305_2.00
Mus musculus
VDDVDNSVNRAGKTCAAGGYCA
TGRCCTTGAMCTYNBSNHBHHB
Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B
0.853
0.614
RXRG
M05617_2.00
Homo sapiens
DRGGTBAARGGTBRN
NYVACCYTTVACCYH
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1
0.853
0.614
RXRG
M05618_2.00
Homo sapiens
VRGGTCAYGACCYB
VRGGTCRTGACCYB
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2
0.853
0.614
Nr2f6
M00811_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH2193
0.848
0.557
Nr2f6
M03419_2.00
Mus musculus
RAGGTCAADAGGTCA
TGACCTHTTGACCTY
SELEX
Jolma et al.(2013)
Nr2f6_1
0.848
0.557
Nr2f6
M03420_2.00
Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
Nr2f6_2
0.848
0.557
Rora
M00819_2.00
Mus musculus
NNRGGTCA
TGACCYNN
PBM
Weirauch et al.(2013)
pTH3464
0.805
0.600
RORA
M03353_2.00
Homo sapiens
NMRAGGTCAAVYYVAGGTCA
TGACCTBRRBTTGACCTYKN
SELEX
Jolma et al.(2013)
RORA_1
0.805
0.600
RORA
M03354_2.00
Homo sapiens
WAWSTRGGTYASTAGGTCA
TGACCTASTRACCYASWTW
SELEX
Jolma et al.(2013)
RORA_2
0.805
0.600
RORA
M02705_2.00
Homo sapiens
WWVDAGGTCA
TGACCTHBWW
SELEX
Mathelier et al.(2014)
MA0071.1
0.805
0.600
RORA
M02706_2.00
Homo sapiens
NDWAWBTAGGTCAN
NTGACCTAVWTWHN
SELEX
Mathelier et al.(2014)
MA0072.1
0.805
0.600
RORA
M09265_2.00
Homo sapiens
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_HUMAN.H11MO.0.C
0.805
0.600
Rora
M09327_2.00
Mus musculus
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_MOUSE.H11MO.0.C
0.805
0.600
RORA
M11090_2.00
Homo sapiens
DWWWVDAGGTCAH
DTGACCTHBWWWH
Transfac
Matys et al.(2006)
V$RORA1_01
0.805
0.600
RORA
M11091_2.00
Homo sapiens
DWAWBTAGGTCAN
NTGACCTAVWTWH
Transfac
Matys et al.(2006)
V$RORA2_01
0.805
0.600
RORA
M11092_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORALPHA_Q4
0.805
0.600
RORA
M11093_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORA_Q4
0.805
0.600
Rorb
M00820_2.00
Mus musculus
NRGGTCANN
NNTGACCYN
PBM
Weirauch et al.(2013)
pTH3469
0.801
0.571
rorb
M02404_2.00
Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6589
0.801
0.571
RORB
M05677_2.00
Homo sapiens
DAWNTRGGTYAGTRGGTCAN
NTGACCYACTRACCYANWTH
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_1
0.801
0.571
RORB
M05678_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_2
0.801
0.571
RORB
M05883_2.00
Homo sapiens
AWNBRGGTCAN
NTGACCYVNWT
SMiLE-seq
Isakova et al.(2017)
RORb
0.801
0.571
RORB
M11187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORBETA_Q2
0.801
0.571
RORB
M05679_2.00
Homo sapiens
DAWBTRGGTYAGTRGGTCRN
NYGACCYACTRACCYAVWTH
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_1
0.801
0.571
RORB
M05680_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_2
0.801
0.571
AAEL009588
M02388_2.00
Aedes aegypti
NRGGTCR
YGACCYN
PBM
Weirauch et al.(2014)
pTH5508
0.798
0.571
Hr46
M02406_2.00
Drosophila melanogaster
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6142
0.798
0.571
Hr46
M03926_2.00
Drosophila melanogaster
RGGTCAGTRGGTCA
TGACCYACTGACCY
SELEX
Nitta et al.(2015)
Hr46_1
0.798
0.571
Hr46
M06412_2.00
Drosophila melanogaster
AWKTGGGTYW
WRACCCAMWT
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
0.798
0.571
Hr46
M06413_2.00
Drosophila melanogaster
HWNBAGGTCA
TGACCTVNWD
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
0.798
0.571
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN
NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.792
0.586
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN
NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.792
0.586
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA
TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.792
0.586
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB
VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.792
0.586
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN
NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.792
0.586
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD
HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.792
0.586
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA
TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.792
0.586
NR2F2
M11181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.792
0.586
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN
NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.789
0.586
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN
NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.789
0.586
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.789
0.586
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN
NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.789
0.586
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN
NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.789
0.586
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG
CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.789
0.586
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.789
0.586
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY
RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.789
0.586
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.789
0.586
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY
RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.789
0.586
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN
NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.789
0.586
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA
TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.789
0.586
NR2F1
M11172_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.789
0.586
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.789
0.586
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH
DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.789
0.586
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.789
0.586
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.789
0.586
Nr2c1
M00812_2.00
Mus musculus
NRRGGTCANN
NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH1284
0.786
0.586
Nr2c1
M02399_2.00
Mus musculus
RRGGTCAH
DTGACCYY
PBM
Weirauch et al.(2014)
pTH3466
0.786
0.586
NR2C1
M05597_2.00
Homo sapiens
NRGKKCRYGAMMYN
NRKKTCRYGMMCYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_1
0.786
0.586
NR2C1
M05598_2.00
Homo sapiens
NRRGGTCAN
NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_2
0.786
0.586
NR2C1
M09273_2.00
Homo sapiens
RBYVRVAGGTCAB
VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_HUMAN.H11MO.0.C
0.786
0.586
Nr2c1
M09304_2.00
Mus musculus
RBYVRVAGGTCAB
VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_MOUSE.H11MO.0.C
0.786
0.586
NR2C1
M05599_2.00
Homo sapiens
NRRGGTCAN
NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_1
0.786
0.586
NR2C1
M05600_2.00
Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_2
0.786
0.586
RORC
M05621_2.00
Homo sapiens
KRGGTCAYGMCCYM
KRGGKCRTGACCYM
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_1
0.770
0.571
RORC
M05622_2.00
Homo sapiens
NAWNKRGGTYANTRGGTCAN
NTGACCYANTRACCYMNWTN
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_2
0.770
0.571
RORC
M05880_2.00
Homo sapiens
NDAWNTRGGKCA
TGMCCYANWTHN
SMiLE-seq
Isakova et al.(2017)
RORc
0.770
0.571
RORC
M09282_2.00
Homo sapiens
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_HUMAN.H11MO.0.C
0.770
0.571
RORC
M05623_2.00
Homo sapiens
TRGGTCAYGACCYA
TRGGTCRTGACCYA
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_1
0.770
0.571
RORC
M05624_2.00
Homo sapiens
NAWNTRGGTYASTAGGTCAN
NTGACCTASTRACCYANWTN
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_2
0.770
0.571
Rorc
M09324_2.00
Mus musculus
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
0.768
0.571
Rorc
M09617_2.00
Mus musculus
AWBTRGGTCA
TGACCYAVWT
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
0.768
0.571
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR
YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.767
0.543
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA
TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.767
0.543
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.767
0.543
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA
TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.767
0.543
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.767
0.543
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY
RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.767
0.543
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN
NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.767
0.543
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY
RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.767
0.543
NR2F6
M11153_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.767
0.543
NR2F6
M11154_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.767
0.543
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.767
0.543
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.767
0.543
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN
NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.767
0.543
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN
NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.767
0.543
RARG
M02397_2.00
Homo sapiens
VGGTCANN
NNTGACCB
PBM
Weirauch et al.(2014)
pTH5430
0.754
0.586
Rarg
M00810_2.00
Mus musculus
NNVGKTCANN
NNTGAMCBNN
PBM
Weirauch et al.(2013)
pTH4269
0.754
0.586
RARG
M03391_2.00
Homo sapiens
SRGGTCAAAAGGTCAVD
HBTGACCTTTTGACCYS
SELEX
Jolma et al.(2013)
RARG_1
0.754
0.586
RARG
M03392_2.00
Homo sapiens
RAGGTCAHVHWRAGGTCA
TGACCTYWDBDTGACCTY
SELEX
Jolma et al.(2013)
RARG_2
0.754
0.586
RARG
M03393_2.00
Homo sapiens
RRGGTCAHNNRAGGTCA
TGACCTYNNDTGACCYY
SELEX
Jolma et al.(2013)
RARG_3
0.754
0.586
RARG
M03394_2.00
Homo sapiens
GAGGTCAAAAGGTCAY
RTGACCTTTTGACCTC
SELEX
Jolma et al.(2013)
RARG_4
0.754
0.586
RARG
M03395_2.00
Homo sapiens
RAGGTCAABYARRGKTCA
TGAMCYYTRVTTGACCTY
SELEX
Jolma et al.(2013)
RARG_5
0.754
0.586
RARG
M03396_2.00
Homo sapiens
RAGGTCAHBNVRGGTCA
TGACCYBNVDTGACCTY
SELEX
Jolma et al.(2013)
RARG_6
0.754
0.586
Rarg
M03416_2.00
Mus musculus
RRGGTCAAAAGGTCAH
DTGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
Rarg_1
0.754
0.586
Rarg
M03417_2.00
Mus musculus
RAGGTCAWVHAAAGGTCA
TGACCTTTDBWTGACCTY
SELEX
Jolma et al.(2013)
Rarg_2
0.754
0.586
Rarg
M03418_2.00
Mus musculus
AAGGTCAHSARAGGTCA
TGACCTYTSDTGACCTT
SELEX
Jolma et al.(2013)
Rarg_3
0.754
0.586
RARG
M05653_2.00
Homo sapiens
NRGGTCANV
BNTGACCYN
SELEX
Yin et al.(2017)
RARG_FL_HT-SELEX
0.754
0.586
RARG
M05649_2.00
Homo sapiens
DRGGTCAAAAGKTCAN
NTGAMCTTTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_1
0.754
0.586
RARG
M05650_2.00
Homo sapiens
RAGGTCATGACCTH
DAGGTCATGACCTY
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_2
0.754
0.586
Rarg
M05885_2.00
Mus musculus
NRGGTCANDRGKKYA
TRMMCYHNTGACCYN
SMiLE-seq
Isakova et al.(2017)
RARg
0.754
0.586
RARG
M09289_2.00
Homo sapiens
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_HUMAN.H11MO.0.B
0.754
0.586
Rarg
M09300_2.00
Mus musculus
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_MOUSE.H11MO.0.C
0.754
0.586
Rarg
M09613_2.00
Mus musculus
RGKTCAAGGBCA
TGVCCTTGAMCY
Misc
Heinz et al.(2010)
ES-RARg_GSE30538
0.754
0.586
RARG
M11167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RARG_Q3
0.754
0.586
RARG
M05654_2.00
Homo sapiens
NRGGTCRNV
BNYGACCYN
SELEX
Yin et al.(2017)
RARG_FL_Methyl-HT-SELEX
0.754
0.586
RARG
M05651_2.00
Homo sapiens
DRGGTCAARRGGTCRN
NYGACCYYTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_1
0.754
0.586
RARG
M05652_2.00
Homo sapiens
DAGKTCRYGACCYY
RRGGTCRYGAMCTH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_2
0.754
0.586
sex-1
M02416_2.00
Caenorhabditis elegans
RAGGTCAH
DTGACCTY
PBM
Weirauch et al.(2014)
pTH5667
0.751
0.557
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA
TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.750
0.543
Smp_105090
M02412_2.00
Schistosoma mansoni
RGGTCANN
NNTGACCY
PBM
Weirauch et al.(2014)
pTH6174
0.749
0.614
PPARD
M05581_2.00
Homo sapiens
NRRGGTCAAAGGTCAN
NTGACCTTTGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_1
0.748
0.543
PPARD
M05582_2.00
Homo sapiens
HRRGGTCAYGACCYYD
HRRGGTCRTGACCYYD
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_2
0.748
0.543
PPARD
M05583_2.00
Homo sapiens
NRRGGTCAAAGGTCRN
NYGACCTTTGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_1
0.748
0.543
PPARD
M05584_2.00
Homo sapiens
NRRGGTCRCGACCYYN
NRRGGTCGYGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_2
0.748
0.543
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLACP00000012047
Nuclear receptor
262
331
GLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVK
Links
Other
Nuclear receptor
family TFs
Other
Latimeria chalumnae
TFs
1502 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI002885
Acyrthosiphon pisum
ACYPI002885
I
AAEL000236
Aedes aegypti
AAEL000236
I
Alligator_sinensis_CCG003246.1
Alligator sinensis
Alligator_sinensis_CCG003246.1
N
ANCCAN_30535
Ancylostoma caninum
ANCCAN_30535
I
ANCCEY_07256
Ancylostoma ceylanicum
ANCCEY_07256
I
ACAC_0000772401
Angiostrongylus cantonensis
ACAC_0000772401
I
ACOC_0000013301
Angiostrongylus costaricensis
ACOC_0000013301
I
AALB006646
Anopheles albimanus
AALB006646
I
AARA001108
Anopheles arabiensis
AARA001108
I
AATE003062
Anopheles atroparvus
AATE003062
I
ACHR005020
Anopheles christyi
ACHR005020
I
ACUA020854
Anopheles culicifacies
ACUA020854
I
ADIR000975
Anopheles dirus
ADIR000975
I
AEPI005796
Anopheles epiroticus
AEPI005796
I
AFAF018179
Anopheles farauti
AFAF018179
I
AFUN011568
Anopheles funestus
AFUN011568
I
AGAP000069
Anopheles gambiae
AGAP000069
I
AMAM011474
Anopheles maculatus
AMAM011474
I
AMEC012184
Anopheles melas
AMEC012184
I
AMEM007373
Anopheles merus
AMEM007373
I
AMIN002134
Anopheles minimus
AMIN002134
I
AQUA008315
Anopheles quadriannulatus
AQUA008315
I
ASIS005525
Anopheles sinensis
ASIS005525
I
ASTEI06209
Anopheles stephensi
ASTEI06209
I
GB50374
Apis mellifera
GB50374
I
ASU_00906
Ascaris suum
ASU_00906
I
ACEP16720
Atta cephalotes
ACEP16720
I
BGLB003447
Biomphalaria glabrata
BGLB003447
I
BGIBMGA001488
Bombyx mori
BGIBMGA001488
I
e_gw.6.414.1
Branchiostoma floridae
e_gw.6.414.1
I
estExt_fgenesh2_kg.C_80001
Branchiostoma floridae
estExt_fgenesh2_kg.C_80001
I
estExt_fgenesh2_pg.C_1200108
Branchiostoma floridae
estExt_fgenesh2_pg.C_1200108
I
BTMF_0001614201
Brugia timori
BTMF_0001614201
I
BXY_1193200
Bursaphelenchus xylophilus
BXY_1193200
I
CBN31271
Caenorhabditis brenneri
CBN31271
I
CBG12232
Caenorhabditis briggsae
CBG12232
I
fkh-10
Caenorhabditis elegans
WBGene00001442
I
CJA06474
Caenorhabditis japonica
CJA06474
N
CRE23967
Caenorhabditis remanei
CRE23967
I
Cflo_07366--XP_001121752.1_APIME
Camponotus floridanus
Cflo_07366--XP_001121752.1_APIME
I
CapteG111555
Capitella teleta
CapteG111555
I
CapteG148596
Capitella teleta
CapteG148596
N
CapteG40198
Capitella teleta
CapteG40198
N
CapteG82802
Capitella teleta
CapteG82802
I
Cmyd_10015602
Chelonia mydas
Cmyd_10015602
N
CLEC001579
Cimex lectularius
CLEC001579
I
CGI_10003726
Crassostrea gigas
CGI_10003726
I
CpipJ_CPIJ009525
Culex pipiens
CpipJ_CPIJ009525
I
CPIJ009525
Culex quinquefasciatus
CPIJ009525
I
CGOC_0000329701
Cylicostephanus goldi
CGOC_0000329701
I
KGM_06490
Danaus plexippus
KGM_06490
I
foxq2
Danio rerio
ENSDARG00000071394
N
DAPPUDRAFT_50302
Daphnia pulex
DAPPUDRAFT_50302
I
YQE_09099
Dendroctonus ponderosae
YQE_09099
I
nDi.2.2.2.g05283
Dirofilaria immitis
nDi.2.2.2.g05283
I
DME_0000296101
Dracunculus medinensis
DME_0000296101
I
GF10343
Drosophila ananassae
FBgn0087384
I
GG16435
Drosophila erecta
FBgn0108666
I
GH24005
Drosophila grimshawi
FBgn0131461
I
fd102C
Drosophila melanogaster
FBgn0039937
D
GI14084
Drosophila mojavensis
FBgn0136838
I
GL15611
Drosophila persimilis
FBgn0153215
I
GA10799
Drosophila pseudoobscura
FBgn0070855
I
GM26767
Drosophila sechellia
FBgn0181620
I
GJ15974
Drosophila virilis
FBgn0203160
I
GK13662
Drosophila willistoni
FBgn0215670
I
GE14501
Drosophila yakuba
FBgn0232105
I
ECANG7_07537
Echinococcus canadensis
ECANG7_07537
I
ECANG7_08418
Echinococcus canadensis
ECANG7_08418
I
EmuJ_001141600
Echinococcus multilocularis
EmuJ_001141600
I
EEL_0000313101
Elaeophora elaphi
EEL_0000313101
I
D915_07563
Fasciola hepatica
D915_07563
I
GPUH_0002128801
Gongylonema pulchrum
GPUH_0002128801
I
HCOI02176800
Haemonchus contortus
HCOI02176800
I
HPLM_0001940801
Haemonchus placei
HPLM_0001940801
I
Hsal_00505--XP_001121752.1_APIME
Harpegnathos saltator
Hsal_00505--XP_001121752.1_APIME
I
HMEL012130
Heliconius melpomene
HMEL012130
I
HPBE_0001940301
Heligmosomoides bakeri
HPBE_0001940301
I
HelroG146879
Helobdella robusta
HelroG146879
I
HelroG84905
Helobdella robusta
HelroG84905
I
TTAC_0000212301
Hydatigera taeniaeformis
TTAC_0000212301
I
TTAC_0000750901
Hydatigera taeniaeformis
TTAC_0000750901
I
XP_002159677.1
Hydra magnipapillata
XP_002159677.1
I
HDID_0000500401
Hymenolepis diminuta
HDID_0000500401
I
HDID_0000955901
Hymenolepis diminuta
HDID_0000955901
I
HmN_000125600
Hymenolepis microstoma
HmN_000125600
I
HmN_000572200
Hymenolepis microstoma
HmN_000572200
I
HNAJ_0000218001
Hymenolepis nana
HNAJ_0000218001
I
HNAJ_0001261001
Hymenolepis nana
HNAJ_0001261001
I
ISCW003951
Ixodes scapularis
ISCW003951
I
ENSLACG00000010819
Latimeria chalumnae
ENSLACG00000010819
N
ENSLOCG00000005947
Lepisosteus oculatus
ENSLOCG00000005947
I
LDEC001528
Leptinotarsa decemlineata
LDEC001528
I
LotgiG79770
Lottia gigantea
LotgiG79770
I
LotgiG79781
Lottia gigantea
LotgiG79781
I
LCUP005975
Lucilia cuprina
LCUP005975
I
LLOJ007413
Lutzomyia longipalpis
LLOJ007413
I
MESCA005623
Megaselia scalaris
MESCA005623
I
MCOS_0000398701
Mesocestoides corti
MCOS_0000398701
N
NV18839
Nasonia vitripennis
NV18839
I
NECAME_04384
Necator americanus
NECAME_04384
I
NEMVEDRAFT_v1g125256
Nematostella vectensis
NEMVEDRAFT_v1g125256
I
NEMVEDRAFT_v1g39596
Nematostella vectensis
NEMVEDRAFT_v1g39596
I
NEMVEDRAFT_v1g59063
Nematostella vectensis
NEMVEDRAFT_v1g59063
I
NBR_0000095001
Nippostrongylus brasiliensis
NBR_0000095001
I
Ocbimv22038677m.g
Octopus bimaculoides
Ocbimv22038677m.g
I
OESDEN_02306
Oesophagostomum dentatum
OESDEN_02306
I
nOo.2.0.1.g07936
Onchocerca ochengi
nOo.2.0.1.g07936
I
WBGene00238063
Onchocerca volvulus
WBGene00238063
I
Ogr12164
Ophisaurus gracilis
Ogr12164
N
ENSONIG00000004794
Oreochromis niloticus
ENSONIG00000004794
N
foxq2
Oryzias latipes
ENSORLG00000004973
N
PHUM244390
Pediculus humanus
PHUM244390
I
PPAI000826
Phlebotomus papatasi
PPAI000826
I
ENSPFOG00000001440
Poecilia formosa
ENSPFOG00000001440
N
Pvit_09831
Pogona vitticeps
Pvit_09831
N
RPRC002475
Rhodnius prolixus
RPRC002475
I
Sakowv30023329m.g
Saccoglossus kowalevskii
Sakowv30023329m.g
I
C_00890
Schistosoma haematobium
C_00890
N
SMRZ_0001178901
Schistosoma margrebowiei
SMRZ_0001178901
N
SMU15004452
Schmidtea mediterranea
SMU15004452
I
SBAD_0000682701
Soboliphyme baturini
SBAD_0000682701
I
SINV17382
Solenopsis invicta
SINV17382
I
L596_g8980
Steinernema carpocapsae
L596_g8980
I
L889_g23699
Steinernema feltiae
L889_g23699
I
L893_g32272
Steinernema glaseri
L893_g32272
I
L898_g16488
Steinernema monticolum
L898_g16488
I
L892_g5229
Steinernema scapterisci
L892_g5229
I
SMAR012448
Strigamia maritima
SMAR012448
I
SVUK_0000095001
Strongylus vulgaris
SVUK_0000095001
I
TASK_0000135801
Taenia asiatica
TASK_0000135801
I
TsM_000027600
Taenia solium
TsM_000027600
I
tetur01g09690
Tetranychus urticae
tetur01g09690
I
TCLT_0000158601
Thelazia callipaeda
TCLT_0000158601
I
TCNE_0000717001
Toxocara canis
TCNE_0000717001
I
TC004761
Tribolium castaneum
TC004761
I
D917_06283
Trichinella nativa
D917_06283
I
TMUE_s0045003300
Trichuris muris
TMUE_s0045003300
I
D918_04073
Trichuris suis
D918_04073
I
TTRE_0000002201
Trichuris trichiura
TTRE_0000002201
I
WUBG_10187
Wuchereria bancrofti
WUBG_10187
I
ENSXMAG00000012768
Xiphophorus maculatus
ENSXMAG00000012768
N