NR1I2 (Otolemur garnettii)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOGAG00000006017 T304118_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.981 0.957
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.981 0.957
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.981 0.957
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.981 0.957
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.953 0.657
Nr1i2
M09316_2.00 		Mus musculus
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_MOUSE.H11MO.0.C 		0.948 0.929
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.935 0.643
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.935 0.643
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.935 0.643
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.935 0.643
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.935 0.643
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.935 0.643
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.935 0.643
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.935 0.643
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.935 0.643
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.890 0.629
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.858 0.614
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.858 0.614
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.858 0.614
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.858 0.614
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.848 0.543
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.848 0.543
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.848 0.543
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.848 0.543
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.848 0.543
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.848 0.543
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.848 0.543
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.848 0.543
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.848 0.543
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.848 0.543
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.848 0.543
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.848 0.543
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.848 0.543
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.848 0.543
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.848 0.543
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.848 0.543
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.848 0.543
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.848 0.543
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.845 0.529
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.838 0.600
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.777 0.500
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.750 0.529
Nr2f6
M00811_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Weirauch et al.(2013)
pTH2193 		0.746 0.514
Nr2f6
M03419_2.00 		Mus musculus
RAGGTCAADAGGTCA
TGACCTHTTGACCTY		 SELEX
Jolma et al.(2013)
Nr2f6_1 		0.746 0.514
Nr2f6
M03420_2.00 		Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
Nr2f6_2 		0.746 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000005378 Nuclear receptor 32 102

Links

Other Nuclear receptor family TFs
Other Otolemur garnettii TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g10286 Acanthocheilonema viteae nAv.1.0.1.g10286 I
HR96 Aedes aegypti AAEL007202 I
ANCCAN_15412 Ancylostoma caninum ANCCAN_15412 I
ANCCEY_01199 Ancylostoma ceylanicum ANCCEY_01199 I
ANCDUO_17434 Ancylostoma duodenale ANCDUO_17434 I
ACAC_0000565201 Angiostrongylus cantonensis ACAC_0000565201 I
ACAC_0001358501 Angiostrongylus cantonensis ACAC_0001358501 I
ACOC_0000064201 Angiostrongylus costaricensis ACOC_0000064201 I
ASIM_0001146101 Anisakis simplex ASIM_0001146101 I
AALB008395 Anopheles albimanus AALB008395 I
AARA011580 Anopheles arabiensis AARA011580 I
AATE006049 Anopheles atroparvus AATE006049 I
ACOM033140 Anopheles coluzzii ACOM033140 I
ACUA008166 Anopheles culicifacies ACUA008166 I
ADAC003041 Anopheles darlingi ADAC003041 I
ADIR005534 Anopheles dirus ADIR005534 I
AEPI000232 Anopheles epiroticus AEPI000232 I
AFAF019254 Anopheles farauti AFAF019254 I
AFUN010189 Anopheles funestus AFUN010189 I
AGAP004224 Anopheles gambiae AGAP004224 I
AMAM022585 Anopheles maculatus AMAM022585 I
AMEC016766 Anopheles melas AMEC016766 I
AMEM008752 Anopheles merus AMEM008752 I
AMIN004130 Anopheles minimus AMIN004130 I
AQUA008824 Anopheles quadriannulatus AQUA008824 I
ASIS011648 Anopheles sinensis ASIS011648 I
ASTEI03690 Anopheles stephensi ASTEI03690 I
GB52904 Apis mellifera GB52904 I
ASU_07898 Ascaris suum ASU_07898 I
ACEP16468 Atta cephalotes ACEP16468 I
BGLB005044 Biomphalaria glabrata BGLB005044 I
BGLB005077 Biomphalaria glabrata BGLB005077 I
Bm3787 Brugia malayi Bm3787 I
BXY_1418300 Bursaphelenchus xylophilus BXY_1418300 I
BXY_1432000 Bursaphelenchus xylophilus BXY_1432000 I
CBN06351 Caenorhabditis brenneri CBN06351 I
CBN08904 Caenorhabditis brenneri CBN08904 I
CBN26095 Caenorhabditis brenneri CBN26095 I
CBN31767 Caenorhabditis brenneri CBN31767 I
CBG04512 Caenorhabditis briggsae CBG04512 I
CBG07759 Caenorhabditis briggsae CBG07759 I
daf-12 Caenorhabditis elegans WBGene00000908 D
nhr-48 Caenorhabditis elegans WBGene00003638 I
CJA03214 Caenorhabditis japonica CJA03214 I
CJA11532 Caenorhabditis japonica CJA11532 I
CRE07237 Caenorhabditis remanei CRE07237 I
CRE19106 Caenorhabditis remanei CRE19106 I
Cflo_03542--XP_624213.2_APIME Camponotus floridanus Cflo_03542--XP_624213.2_APIME I
CapteG119973 Capitella teleta CapteG119973 I
CapteG121837 Capitella teleta CapteG121837 I
CapteG177005 Capitella teleta CapteG177005 I
CapteG224377 Capitella teleta CapteG224377 I
CLEC000589 Cimex lectularius CLEC000589 I
CGI_10007907 Crassostrea gigas CGI_10007907 I
CGI_10020896 Crassostrea gigas CGI_10020896 I
CGI_10027031 Crassostrea gigas CGI_10027031 I
CpipJ_CPIJ016038 Culex pipiens CpipJ_CPIJ016038 I
CPIJ016038 Culex quinquefasciatus CPIJ016038 I
KGM_05575 Danaus plexippus KGM_05575 I
DAPPUDRAFT_303110 Daphnia pulex DAPPUDRAFT_303110 I
YQE_04331 Dendroctonus ponderosae YQE_04331 I
DICVIV_03942 Dictyocaulus viviparus DICVIV_03942 I
nDi.2.2.2.g04518 Dirofilaria immitis nDi.2.2.2.g04518 I
nDi.2.2.2.g09652 Dirofilaria immitis nDi.2.2.2.g09652 I
DME_0000702701 Dracunculus medinensis DME_0000702701 I
DME_0000943901 Dracunculus medinensis DME_0000943901 I
GF16320 Drosophila ananassae FBgn0093341 I
GG11347 Drosophila erecta FBgn0103647 I
Hr96 Drosophila grimshawi FBgn0020174 I
Hr96 Drosophila melanogaster FBgn0015240 D
GI22223 Drosophila mojavensis FBgn0144951 I
GA11197 Drosophila pseudoobscura FBgn0071252 I
GM17786 Drosophila sechellia FBgn0172693 I
GD21158 Drosophila simulans FBgn0192609 I
GJ24344 Drosophila virilis FBgn0211424 I
GK14276 Drosophila willistoni FBgn0216282 I
GE23543 Drosophila yakuba FBgn0240719 I
EEL_0000817201 Elaeophora elaphi EEL_0000817201 I
EVEC_0001257601 Enterobius vermicularis EVEC_0001257601 I
HCOI01526000 Haemonchus contortus HCOI01526000 I
HPLM_0001602501 Haemonchus placei HPLM_0001602501 I
HHAL000201-PA Halyomorpha halys HHAL000201-PA I
Hsal_04850--XP_624213.2_APIME Harpegnathos saltator Hsal_04850--XP_624213.2_APIME I
HMEL016865 Heliconius melpomene HMEL016865 I
HPBE_0002060301 Heligmosomoides bakeri HPBE_0002060301 I
HelroG137551 Helobdella robusta HelroG137551 I
HelroG137640 Helobdella robusta HelroG137640 I
HelroG99849 Helobdella robusta HelroG99849 I
ISCW009328 Ixodes scapularis ISCW009328 I
LDEC005794 Leptinotarsa decemlineata LDEC005794 I
LOAG_10538 Loa loa LOAG_10538 I
LotgiG100616 Lottia gigantea LotgiG100616 I
LotgiG59139 Lottia gigantea LotgiG59139 I
LCUP002913 Lucilia cuprina LCUP002913 I
MCINX005291 Melitaea cinxia MCINX005291 I
MhA1_Contig1158.frz3.gene18 Meloidogyne hapla MhA1_Contig1158.frz3.gene18 I
Minc13296 Meloidogyne incognita Minc13296 I
Minc18589 Meloidogyne incognita Minc18589 I
MDOA002084 Musca domestica MDOA002084 I
NV10187 Nasonia vitripennis NV10187 I
NECAME_01947 Necator americanus NECAME_01947 I
Ocbimv22006473m.g Octopus bimaculoides Ocbimv22006473m.g I
Ocbimv22015876m.g Octopus bimaculoides Ocbimv22015876m.g I
Ocbimv22029529m.g Octopus bimaculoides Ocbimv22029529m.g I
OFLC_0000598101 Onchocerca flexuosa OFLC_0000598101 I
WBGene00239037 Onchocerca volvulus WBGene00239037 I
PTRK_0001132000 Parastrongyloides trichosuri PTRK_0001132000 I
PTRK_0001378700 Parastrongyloides trichosuri PTRK_0001378700 I
PHUM460970 Pediculus humanus PHUM460970 I
PPAI005921 Phlebotomus papatasi PPAI005921 I
scaffold1545-EXSNAP2012.2 Pristionchus exspectatus scaffold1545-EXSNAP2012.2 I
scaffold61-EXSNAP2012.64 Pristionchus exspectatus scaffold61-EXSNAP2012.64 I
scaffold889-EXSNAP2012.10 Pristionchus exspectatus scaffold889-EXSNAP2012.10 I
Ppa-nhr-8 Pristionchus pacificus PPA17111 I
Ppa-nhr-48 Pristionchus pacificus PPA20177 I
RSKR_0000789200 Rhabditophanes kr3021 RSKR_0000789200 I
RSKR_0001015700 Rhabditophanes kr3021 RSKR_0001015700 I
RPRC001794 Rhodnius prolixus RPRC001794 I
L596_g25556 Steinernema carpocapsae L596_g25556 I
L596_g8771 Steinernema carpocapsae L596_g8771 I
L596_g9326 Steinernema carpocapsae L596_g9326 I
L889_g10853 Steinernema feltiae L889_g10853 I
L889_g7248 Steinernema feltiae L889_g7248 I
L893_g16225 Steinernema glaseri L893_g16225 I
L893_g3995 Steinernema glaseri L893_g3995 I
L893_g8292 Steinernema glaseri L893_g8292 I
L898_g10498 Steinernema monticolum L898_g10498 I
L898_g1817 Steinernema monticolum L898_g1817 I
L898_g23217 Steinernema monticolum L898_g23217 I
L892_g14860 Steinernema scapterisci L892_g14860 I
L892_g18386 Steinernema scapterisci L892_g18386 I
L892_g26350 Steinernema scapterisci L892_g26350 I
SMAR007355 Strigamia maritima SMAR007355 I
SPAL_0000150000 Strongyloides papillosus SPAL_0000150000 I
SPAL_0001591300 Strongyloides papillosus SPAL_0001591300 I
SSTP_0001172300 Strongyloides stercoralis SSTP_0001172300 I
SSTP_0001272200 Strongyloides stercoralis SSTP_0001272200 I
SVE_0958300 Strongyloides venezuelensis SVE_0958300 I
SVE_0996600 Strongyloides venezuelensis SVE_0996600 I
SVUK_0001112701 Strongylus vulgaris SVUK_0001112701 I
SMUV_0000312501 Syphacia muris SMUV_0000312501 I
SMUV_0000920301 Syphacia muris SMUV_0000920301 I
SMUV_0001002101 Syphacia muris SMUV_0001002101 I
TELCIR_04889 Teladorsagia circumcincta TELCIR_04889 I
TELCIR_05516 Teladorsagia circumcincta TELCIR_05516 I
tetur17g03630 Tetranychus urticae tetur17g03630 I
tetur34g00750 Tetranychus urticae tetur34g00750 I
TCLT_0000386701 Thelazia callipaeda TCLT_0000386701 I
TC010645 Tribolium castaneum TC010645 I
WUBG_12640 Wuchereria bancrofti WUBG_12640 I
WUBG_13334 Wuchereria bancrofti WUBG_13334 I
L798_15710 Zootermopsis nevadensis L798_15710 I