CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-48
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00003638
T306162_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including anterior gonad arm and spermatheca. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); lipid storage disease (multiple); melanoma (multiple); and tuberculosis (multiple). Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2) and VDR (vitamin D receptor). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR
YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.905
0.657
daf-12
M00685_2.00
Caenorhabditis elegans
NDAGTRCANN
NNTGYACTHN
PBM
Narasimhan et al.(2015)
pTH9108
0.806
0.771
daf-12
M08159_2.00
Caenorhabditis elegans
GWGYGYGYKTGYDKB
VMHRCAMRCRCRCWC
ChIP-seq
Mathelier et al.(2014)
MA0538.1
0.806
0.771
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ZK662.3a
Nuclear receptor
98
167
KVCRVCGDKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTKCFAVSLAE
ZK662.3b
Nuclear receptor
98
167
KVCRVCGDKAFSYNFNVITCESCKAFFRRNANKEKEIRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKK
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE19106
Caenorhabditis remanei
CRE19106
I
0.992
CBN06351
Caenorhabditis brenneri
CBN06351
I
0.992
CBG07759
Caenorhabditis briggsae
CBG07759
I
0.992
CJA03214
Caenorhabditis japonica
CJA03214
I
0.990
ACAC_0001358501
Angiostrongylus cantonensis
ACAC_0001358501
I
0.989
HCOI01526000
Haemonchus contortus
HCOI01526000
I
0.989
NECAME_01947
Necator americanus
NECAME_01947
I
0.989
TELCIR_04889
Teladorsagia circumcincta
TELCIR_04889
I
0.989
SVUK_0001112701
Strongylus vulgaris
SVUK_0001112701
I
0.989
DICVIV_03942
Dictyocaulus viviparus
DICVIV_03942
I
0.989
Minc18589
Meloidogyne incognita
Minc18589
I
0.983
Minc13296
Meloidogyne incognita
Minc13296
I
0.983
MhA1_Contig1158.frz3.gene18
Meloidogyne hapla
MhA1_Contig1158.frz3.gene18
I
0.983
scaffold1545-EXSNAP2012.2
Pristionchus exspectatus
scaffold1545-EXSNAP2012.2
I
0.982
SMUV_0000312501
Syphacia muris
SMUV_0000312501
I
0.982
HPLM_0001602501
Haemonchus placei
HPLM_0001602501
I
0.982
BXY_1432000
Bursaphelenchus xylophilus
BXY_1432000
I
0.982
Ppa-nhr-48
Pristionchus pacificus
PPA20177
I
0.982
L596_g9326
Steinernema carpocapsae
L596_g9326
I
0.980
L893_g8292
Steinernema glaseri
L893_g8292
I
0.980
L892_g26350
Steinernema scapterisci
L892_g26350
I
0.980
L898_g1817
Steinernema monticolum
L898_g1817
I
0.980
ISCW009328
Ixodes scapularis
ISCW009328
I
0.964
ACOC_0000352001
Angiostrongylus costaricensis
ACOC_0000352001
N
0.950
CBN26095
Caenorhabditis brenneri
CBN26095
I
0.936
PPAI005921
Phlebotomus papatasi
PPAI005921
I
0.932
AFAF019254
Anopheles farauti
AFAF019254
I
0.926
ADIR005534
Anopheles dirus
ADIR005534
I
0.924
AALB008395
Anopheles albimanus
AALB008395
I
0.912
ADAC003041
Anopheles darlingi
ADAC003041
I
0.912
ASIS011648
Anopheles sinensis
ASIS011648
I
0.909
AATE006049
Anopheles atroparvus
AATE006049
I
0.909
AFUN010189
Anopheles funestus
AFUN010189
I
0.908
AMAM022585
Anopheles maculatus
AMAM022585
I
0.908
CpipJ_CPIJ016038
Culex pipiens
CpipJ_CPIJ016038
I
0.908
ACOM033140
Anopheles coluzzii
ACOM033140
I
0.908
AARA011580
Anopheles arabiensis
AARA011580
I
0.908
AMEC016766
Anopheles melas
AMEC016766
I
0.908
ACUA008166
Anopheles culicifacies
ACUA008166
I
0.908
AMEM008752
Anopheles merus
AMEM008752
I
0.908
CPIJ016038
Culex quinquefasciatus
CPIJ016038
I
0.908
AGAP004224
Anopheles gambiae
AGAP004224
I
0.908
HR96
Aedes aegypti
AAEL007202
I
0.908
ASTEI03690
Anopheles stephensi
ASTEI03690
I
0.908
AQUA008824
Anopheles quadriannulatus
AQUA008824
I
0.908
AMIN004130
Anopheles minimus
AMIN004130
I
0.908
AEPI000232
Anopheles epiroticus
AEPI000232
I
0.906
GI22223
Drosophila mojavensis
FBgn0144951
I
0.905
GG11347
Drosophila erecta
FBgn0103647
I
0.905
MDOA002084
Musca domestica
MDOA002084
I
0.905
GF16320
Drosophila ananassae
FBgn0093341
I
0.905
LCUP002913
Lucilia cuprina
LCUP002913
I
0.905
GA11197
Drosophila pseudoobscura
FBgn0071252
I
0.905
Hr96
Drosophila grimshawi
FBgn0020174
I
0.905
Hr96
Drosophila melanogaster
FBgn0015240
D
0.905
GD21158
Drosophila simulans
FBgn0192609
I
0.905
GE23543
Drosophila yakuba
FBgn0240719
I
0.905
GM17786
Drosophila sechellia
FBgn0172693
I
0.905
GJ24344
Drosophila virilis
FBgn0211424
I
0.905
HHAL000201-PA
Halyomorpha halys
HHAL000201-PA
I
0.904
PTRK_0001132000
Parastrongyloides trichosuri
PTRK_0001132000
I
0.901
L798_15710
Zootermopsis nevadensis
L798_15710
I
0.901
GK14276
Drosophila willistoni
FBgn0216282
I
0.900
LDEC005794
Leptinotarsa decemlineata
LDEC005794
I
0.900
SVE_0958300
Strongyloides venezuelensis
SVE_0958300
I
0.899
SPAL_0000150000
Strongyloides papillosus
SPAL_0000150000
I
0.899
SSTP_0001272200
Strongyloides stercoralis
SSTP_0001272200
I
0.899
MCINX005291
Melitaea cinxia
MCINX005291
I
0.898
tetur17g03630
Tetranychus urticae
tetur17g03630
I
0.898
PHUM460970
Pediculus humanus
PHUM460970
I
0.895
YQE_04331
Dendroctonus ponderosae
YQE_04331
I
0.890
DAPPUDRAFT_303110
Daphnia pulex
DAPPUDRAFT_303110
I
0.888
TC010645
Tribolium castaneum
TC010645
I
0.887
tetur34g00750
Tetranychus urticae
tetur34g00750
I
0.883
CLEC000589
Cimex lectularius
CLEC000589
I
0.882
RPRC001794
Rhodnius prolixus
RPRC001794
I
0.874
EEL_0000817201
Elaeophora elaphi
EEL_0000817201
I
0.865
WUBG_13334
Wuchereria bancrofti
WUBG_13334
I
0.865
KGM_05575
Danaus plexippus
KGM_05575
I
0.865
Bm3787
Brugia malayi
Bm3787
I
0.865
BGIBMGA010782
Bombyx mori
BGIBMGA010782
I
0.865
HMEL016865
Heliconius melpomene
HMEL016865
I
0.865
SMAR007355
Strigamia maritima
SMAR007355
I
0.864
nAv.1.0.1.g10286
Acanthocheilonema viteae
nAv.1.0.1.g10286
I
0.852
nDi.2.2.2.g04518
Dirofilaria immitis
nDi.2.2.2.g04518
I
0.849
NV10187
Nasonia vitripennis
NV10187
I
0.844
Hsal_04850--XP_624213.2_APIME
Harpegnathos saltator
Hsal_04850--XP_624213.2_APIME
I
0.844
GB52904
Apis mellifera
GB52904
I
0.844
Cflo_03542--XP_624213.2_APIME
Camponotus floridanus
Cflo_03542--XP_624213.2_APIME
I
0.838
CBN31767
Caenorhabditis brenneri
CBN31767
I
0.806
CBG04512
Caenorhabditis briggsae
CBG04512
I
0.806
CJA11532
Caenorhabditis japonica
CJA11532
I
0.806
scaffold61-EXSNAP2012.64
Pristionchus exspectatus
scaffold61-EXSNAP2012.64
I
0.806
ANCCAN_15412
Ancylostoma caninum
ANCCAN_15412
I
0.806
ACOC_0000064201
Angiostrongylus costaricensis
ACOC_0000064201
I
0.806
TELCIR_05516
Teladorsagia circumcincta
TELCIR_05516
I
0.806
daf-12
Caenorhabditis elegans
WBGene00000908
D
0.806
CRE07237
Caenorhabditis remanei
CRE07237
I
0.806
ANCDUO_17434
Ancylostoma duodenale
ANCDUO_17434
I
0.806
ACEP16468
Atta cephalotes
ACEP16468
I
0.805
PTRK_0000134600
Parastrongyloides trichosuri
PTRK_0000134600
N
0.800
SMUV_0001002101
Syphacia muris
SMUV_0001002101
I
0.799
PTRK_0001378700
Parastrongyloides trichosuri
PTRK_0001378700
I
0.799
SSTP_0001172300
Strongyloides stercoralis
SSTP_0001172300
I
0.799
SPAL_0001591300
Strongyloides papillosus
SPAL_0001591300
I
0.799
nDi.2.2.2.g09652
Dirofilaria immitis
nDi.2.2.2.g09652
I
0.799
DME_0000943901
Dracunculus medinensis
DME_0000943901
I
0.799
ASIM_0001146101
Anisakis simplex
ASIM_0001146101
I
0.799
ASU_07898
Ascaris suum
ASU_07898
I
0.799
WUBG_12640
Wuchereria bancrofti
WUBG_12640
I
0.799
LOAG_10538
Loa loa
LOAG_10538
I
0.799
WBGene00239037
Onchocerca volvulus
WBGene00239037
I
0.799
TCLT_0000386701
Thelazia callipaeda
TCLT_0000386701
I
0.799
BXY_1418300
Bursaphelenchus xylophilus
BXY_1418300
I
0.799
SVE_0996600
Strongyloides venezuelensis
SVE_0996600
I
0.799
L889_g10853
Steinernema feltiae
L889_g10853
I
0.799
L596_g8771
Steinernema carpocapsae
L596_g8771
I
0.799
EVEC_0001257601
Enterobius vermicularis
EVEC_0001257601
I
0.799
L898_g10498
Steinernema monticolum
L898_g10498
I
0.799
L596_g25556
Steinernema carpocapsae
L596_g25556
I
0.789
L892_g14860
Steinernema scapterisci
L892_g14860
I
0.782
L893_g16225
Steinernema glaseri
L893_g16225
I
0.774
L892_g18386
Steinernema scapterisci
L892_g18386
I
0.771
L893_g3995
Steinernema glaseri
L893_g3995
I
0.767
tetur30g01210
Tetranychus urticae
tetur30g01210
N
0.765
ASU_08827
Ascaris suum
ASU_08827
N
0.758
RSKR_0001015700
Rhabditophanes kr3021
RSKR_0001015700
I
0.754
ANCCEY_01199
Ancylostoma ceylanicum
ANCCEY_01199
I
0.749
scaffold889-EXSNAP2012.10
Pristionchus exspectatus
scaffold889-EXSNAP2012.10
I
0.748