Brh_R012041 (Buceros rhinoceros)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Brh_R012041 T306581_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.986 0.956
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.986 0.956
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.986 0.956
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.986 0.956
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.986 0.956
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.986 0.956
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.986 0.956
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.986 0.956
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.986 0.956
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.986 0.956
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.986 0.956
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.986 0.956
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.986 0.956
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.986 0.956
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.986 0.956
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.986 0.956
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.986 0.956
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.986 0.956
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.986 0.956
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.986 0.956
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.986 0.956
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.986 0.956
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.986 0.956
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.986 0.956
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.986 0.956
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.986 0.956
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.986 0.956
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.986 0.956
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.986 0.956
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.986 0.956
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.986 0.956
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.986 0.956
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.984 0.882
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.984 0.882
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.984 0.882
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.984 0.882
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.984 0.882
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.983 0.853
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.983 0.853
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.983 0.853
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.983 0.853
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.983 0.853
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.983 0.853
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R012041 Nuclear receptor 22 90

Links

Other Nuclear receptor family TFs
Other Buceros rhinoceros TFs

301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I
ENSAMEG00000014775 Ailuropoda melanoleuca ENSAMEG00000014775 I
Alligator_sinensis_CCG001309.1 Alligator sinensis Alligator_sinensis_CCG001309.1 I
Alligator_sinensis_CCG017491.1 Alligator sinensis Alligator_sinensis_CCG017491.1 I
Aqu1.219264 Amphimedon queenslandica Aqu1.219264 I
ENSAPLG00000004145 Anas platyrhynchos ENSAPLG00000004145 I
ENSAPLG00000009146 Anas platyrhynchos ENSAPLG00000009146 I
KLF11 Anolis carolinensis ENSACAG00000000128 I
KLF10 Anolis carolinensis ENSACAG00000009177 I
GB45040 Apis mellifera GB45040 I
Afo_R002224 Aptenodytes forsteri Afo_R002224 I
Afo_R015752 Aptenodytes forsteri Afo_R015752 I
ENSAMXG00000004794 Astyanax mexicanus ENSAMXG00000004794 I
ENSAMXG00000011768 Astyanax mexicanus ENSAMXG00000011768 I
ACEP10867 Atta cephalotes ACEP10867 I
ACEP25218 Atta cephalotes ACEP25218 I
ENSP00000307023-D1 Bos grunniens ENSP00000307023-D1 I
KLF10 Bos taurus ENSBTAG00000014396 I
KLF11 Bos taurus ENSBTAG00000046218 I
estExt_fgenesh2_pg.C_5760011 Branchiostoma floridae estExt_fgenesh2_pg.C_5760011 I
Brh_R008046 Buceros rhinoceros Brh_R008046 I
Brh_R012523 Buceros rhinoceros Brh_R012523 I
KLF10 Callithrix jacchus ENSCJAG00000016069 I
Aan_R003929 Calypte anna Aan_R003929 I
Aan_R015392 Calypte anna Aan_R015392 I
KLF10 Canis familiaris ENSCAFG00000000638 I
KLF11 Canis familiaris ENSCAFG00000003405 I
CapteG131091 Capitella teleta CapteG131091 I
KLF10 Cavia porcellus ENSCPOG00000011105 I
KLF11 Cavia porcellus ENSCPOG00000025767 I
Cmyd_10010871 Chelonia mydas Cmyd_10010871 I
ENSCSAG00000007163 Chlorocebus sabaeus ENSCSAG00000007163 I
ENSCSAG00000011934 Chlorocebus sabaeus ENSCSAG00000011934 I
ENSCING00000006082 Ciona intestinalis ENSCING00000006082 I
ENSCSAVG00000009024 Ciona savignyi ENSCSAVG00000009024 I
klf11b Danio rerio ENSDARG00000013794 I
klf11a Danio rerio ENSDARG00000030844 I
DAPPUDRAFT_312628 Daphnia pulex DAPPUDRAFT_312628 I
KLF10 Dasypus novemcinctus ENSDNOG00000017020 I
KLF11 Dasypus novemcinctus ENSDNOG00000035689 I
ENSDORG00000012974 Dipodomys ordii ENSDORG00000012974 I
Klf10 Dipodomys ordii ENSDORG00000015269 I
KLF11 Echinops telfairi ENSETEG00000002915 I
KLF10 Echinops telfairi ENSETEG00000016283 I
KLF10 Equus caballus ENSECAG00000013153 I
KLF11 Equus caballus ENSECAG00000015820 I
KLF11 Erinaceus europaeus ENSEEUG00000006894 I
KLF10 Erinaceus europaeus ENSEEUG00000009077 I
KLF10 Felis catus ENSFCAG00000026958 I
KLF11 Felis catus ENSFCAG00000030965 I
ENSFALG00000005917 Ficedula albicollis ENSFALG00000005917 I
ENSFALG00000006648 Ficedula albicollis ENSFALG00000006648 I
ENSGMOG00000003463 Gadus morhua ENSGMOG00000003463 I
ENSGMOG00000011144 Gadus morhua ENSGMOG00000011144 I
ENSGALG00000016063 Gallus gallus ENSGALG00000016063 I
KLF11 Gallus gallus ENSGALG00000016440 I
KLF11 Gasterosteus aculeatus ENSGACG00000001487 I
KLF10 Gasterosteus aculeatus ENSGACG00000004632 I
KLF11 Gasterosteus aculeatus ENSGACG00000008836 I
Gfo_R006024 Geospiza fortis Gfo_R006024 I
Gfo_R015265 Geospiza fortis Gfo_R015265 I
KLF11 Gorilla gorilla ENSGGOG00000012494 I
KLF10 Gorilla gorilla ENSGGOG00000015206 I
KLF10 Homo sapiens ENSG00000155090 D
KLF11 Homo sapiens ENSG00000172059 D
ENSSTOG00000002442 Ictidomys tridecemlineatus ENSSTOG00000002442 I
ENSSTOG00000027022 Ictidomys tridecemlineatus ENSSTOG00000027022 I
ENSLACG00000010260 Latimeria chalumnae ENSLACG00000010260 I
ENSLACG00000013560 Latimeria chalumnae ENSLACG00000013560 I
ENSLOCG00000016837 Lepisosteus oculatus ENSLOCG00000016837 I
KLF10 Loxodonta africana ENSLAFG00000000037 I
KLF11 Loxodonta africana ENSLAFG00000032182 I
ENSP00000285407 Macaca fascicularis ENSP00000285407 I
ENSP00000307023 Macaca fascicularis ENSP00000307023 I
KLF11 Macaca mulatta ENSMMUG00000002054 I
KLF10 Macaca mulatta ENSMMUG00000018815 I
ENSMEUG00000000662 Macropus eugenii ENSMEUG00000000662 I
KLF10 Meleagris gallopavo ENSMGAG00000012319 I
KLF11 Meleagris gallopavo ENSMGAG00000014008 I
ENSMICG00000002285 Microcebus murinus ENSMICG00000002285 I
KLF10 Monodelphis domestica ENSMODG00000005896 I
KLF11 Monodelphis domestica ENSMODG00000014758 I
ENSMPUG00000013287 Mustela putorius furo ENSMPUG00000013287 I
ENSMPUG00000015132 Mustela putorius furo ENSMPUG00000015132 I
Klf11 Mus musculus ENSMUSG00000020653 I
Klf10 Mus musculus ENSMUSG00000037465 I
Myotis_brandtii_KLF10_10032162 Myotis brandtii Myotis_brandtii_KLF10_10032162 I
Myotis_brandtii_KLF11_10020832 Myotis brandtii Myotis_brandtii_KLF11_10020832 I
KLF11 Myotis lucifugus ENSMLUG00000002295 I
KLF10 Myotis lucifugus ENSMLUG00000012969 I
NV23733 Nasonia vitripennis NV23733 I
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I
ENSNLEG00000003646 Nomascus leucogenys ENSNLEG00000003646 I
ENSNLEG00000013701 Nomascus leucogenys ENSNLEG00000013701 I
KLF10 Ochotona princeps ENSOPRG00000006656 I
KLF11 Ochotona princeps ENSOPRG00000013425 I
Ogr04283 Ophisaurus gracilis Ogr04283 I
ENSONIG00000003704 Oreochromis niloticus ENSONIG00000003704 I
ENSONIG00000016428 Oreochromis niloticus ENSONIG00000016428 I
ENSONIG00000018808 Oreochromis niloticus ENSONIG00000018808 I
KLF11 Ornithorhynchus anatinus ENSOANG00000007790 I
KLF10 Ornithorhynchus anatinus ENSOANG00000013800 I
KLF11 Oryctolagus cuniculus ENSOCUG00000003809 I
KLF10 Oryctolagus cuniculus ENSOCUG00000016141 I
KLF11 Oryzias latipes ENSORLG00000015191 I
KLF11 Oryzias latipes ENSORLG00000018102 I
KLF10 Otolemur garnettii ENSOGAG00000014528 I
KLF11 Otolemur garnettii ENSOGAG00000026035 I
ENSOARG00000015319 Ovis aries ENSOARG00000015319 I
ENSOARG00000017131 Ovis aries ENSOARG00000017131 I
KLF11 Pan troglodytes ENSPTRG00000011645 I
KLF10 Pan troglodytes ENSPTRG00000020484 I
ENSPANG00000008644 Papio anubis ENSPANG00000008644 I
ENSPANG00000009227 Papio anubis ENSPANG00000009227 I
PHUM248360 Pediculus humanus PHUM248360 I
ENSPSIG00000010816 Pelodiscus sinensis ENSPSIG00000010816 I
ENSPSIG00000012678 Pelodiscus sinensis ENSPSIG00000012678 I
ENSPMAG00000001515 Petromyzon marinus ENSPMAG00000001515 I
ENSPFOG00000005130 Poecilia formosa ENSPFOG00000005130 I
ENSPFOG00000015744 Poecilia formosa ENSPFOG00000015744 I
Pvit_03838 Pogona vitticeps Pvit_03838 I
Pvit_14441 Pogona vitticeps Pvit_14441 I
ENSPPYG00000012659 Pongo abelii ENSPPYG00000012659 I
ENSPPYG00000018800 Pongo abelii ENSPPYG00000018800 I
KLF11 Procavia capensis ENSPCAG00000011366 I
KLF10 Pteropus vampyrus ENSPVAG00000013271 I
KLF11 Pteropus vampyrus ENSPVAG00000017463 I
Klf10 Rattus norvegicus ENSRNOG00000006118 I
Klf11 Rattus norvegicus ENSRNOG00000054259 I
Sakowv30032823m.g Saccoglossus kowalevskii Sakowv30032823m.g I
ENSSHAG00000005846 Sarcophilus harrisii ENSSHAG00000005846 I
ENSSHAG00000018290 Sarcophilus harrisii ENSSHAG00000018290 I
SINV19724 Solenopsis invicta SINV19724 I
KLF11 Sorex araneus ENSSARG00000004298 I
SPU_026418 Strongylocentrotus purpuratus SPU_026418 I
KLF10 Sus scrofa ENSSSCG00000027480 I
ENSSSCG00000027819 Sus scrofa ENSSSCG00000027819 I
KLF10 Taeniopygia guttata ENSTGUG00000012120 I
KLF11 Taeniopygia guttata ENSTGUG00000013041 I
KLF11 Takifugu rubripes ENSTRUG00000008202 I
KLF10 Takifugu rubripes ENSTRUG00000010298 I
KLF11 Takifugu rubripes ENSTRUG00000013598 I
ENSTSYG00000003347 Tarsius syrichta ENSTSYG00000003347 I
KLF11 Tetraodon nigroviridis ENSTNIG00000000881 I
TC000837 Tribolium castaneum TC000837 I
KLF11 Tupaia belangeri ENSTBEG00000008268 I
KLF10 Tursiops truncatus ENSTTRG00000000383 I
KLF11 Tursiops truncatus ENSTTRG00000017207 I
Tal_R007530 Tyto alba Tal_R007530 I
Tal_R013154 Tyto alba Tal_R013154 I
klf10.L Xenopus laevis XB-GENE-17335049 I
klf11.S Xenopus laevis XB-GENE-17345045 I
klf10.S Xenopus laevis XB-GENE-866571 I
klf11.L Xenopus laevis XB-GENE-956865 I
klf10 Xenopus tropicalis XB-GENE-854761 I
klf11 Xenopus tropicalis XB-GENE-956858 I
ENSXMAG00000009885 Xiphophorus maculatus ENSXMAG00000009885 I
ENSXMAG00000010947 Xiphophorus maculatus ENSXMAG00000010947 I