SMUV_0000721901 (Syphacia muris)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SMUV_0000721901 T310421_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-122
M00696_2.00 		Caenorhabditis elegans
NDTGGAGTVN
NBACTCCAHN		 PBM
Narasimhan et al.(2015)
pTH9326 		0.779 0.471
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000721901-mRNA-1 Nuclear receptor 5 74

Links

Other Nuclear receptor family TFs
Other Syphacia muris TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI5G13450 Brachypodium distachyon BRADI5G13450 N 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
OBART04G16110 Oryza barthii OBART04G16110 N 0.000
OGLUM04G16020 Oryza glumaepatula OGLUM04G16020 N 0.000
BGIOSGA014881 Oryza indica BGIOSGA014881 N 0.000
OLONG_005904 Oryza longistaminata OLONG_005904 N 0.000
OMERI01G02010 Oryza meridionalis OMERI01G02010 N 0.000
ONIVA04G14230 Oryza nivara ONIVA04G14230 N 0.000
OPUNC04G13980 Oryza punctata OPUNC04G13980 N 0.000
ORUFI04G17470 Oryza rufipogon ORUFI04G17470 N 0.000
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Ga01597 Panicum virgatum Pavir.Ga01597 I 0.000
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000