SMTD_0001918101 (Schistosoma mattheei)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 SMTD_0001918101 T312915_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.758 0.758
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.758 0.758
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.742 0.742
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.742 0.742
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.742 0.742
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.742 0.742
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.742 0.742
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.742 0.742
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.742 0.742
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.742 0.742
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.742 0.742
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.742 0.742
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.742 0.742
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.726 0.726
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.726 0.726
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.726 0.726
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.710 0.710
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.710 0.710
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.710 0.710
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.710 0.710
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.710 0.710
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.710 0.710
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.710 0.710
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.710 0.710
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.710 0.710
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.710 0.710
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.710 0.710
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.710 0.710
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.710 0.710
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.710 0.710
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.710 0.710
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.710 0.710
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.710 0.710
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.710 0.710
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.710 0.710
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.710 0.710
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMTD_0001918101-mRNA-1 Paired box 181 242

Links

Other Paired box family TFs
Other Schistosoma mattheei TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005407 Ailuropoda melanoleuca ENSAMEG00000005407 I
ENSAPLG00000002762 Anas platyrhynchos ENSAPLG00000002762 I
ZBTB20 Anolis carolinensis ENSACAG00000009851 I
Afo_R013084 Aptenodytes forsteri Afo_R013084 I
ENSP00000419153-D1 Bos grunniens ENSP00000419153-D1 I
ZBTB20 Bos taurus ENSBTAG00000011928 I
Brh_R009865 Buceros rhinoceros Brh_R009865 I
ZBTB20 Callithrix jacchus ENSCJAG00000009211 I
Aan_R001234 Calypte anna Aan_R001234 I
ZBTB20 Canis familiaris ENSCAFG00000010823 I
ZBTB20 Cavia porcellus ENSCPOG00000021801 I
Cmyd_10014359 Chelonia mydas Cmyd_10014359 I
ENSCSAG00000006941 Chlorocebus sabaeus ENSCSAG00000006941 I
ZBTB20 Dasypus novemcinctus ENSDNOG00000042525 I
Zbtb20 Dipodomys ordii ENSDORG00000008535 I
ZBTB20 Echinops telfairi ENSETEG00000013007 I
ZBTB20 Equus caballus ENSECAG00000015809 I
ZBTB20 Erinaceus europaeus ENSEEUG00000005612 I
ZBTB20 Felis catus ENSFCAG00000022767 I
ENSFALG00000006027 Ficedula albicollis ENSFALG00000006027 I
ZBTB20 Gallus gallus ENSGALG00000015094 I
zbtb20 Gasterosteus aculeatus ENSGACG00000020693 I
Gfo_R000202 Geospiza fortis Gfo_R000202 I
ZBTB20 Gorilla gorilla ENSGGOG00000025065 I
ZBTB20 Homo sapiens ENSG00000181722 D
ENSSTOG00000001832 Ictidomys tridecemlineatus ENSSTOG00000001832 I
ZBTB20 Loxodonta africana ENSLAFG00000002752 I
ENSMMUP00000039977 Macaca fascicularis ENSMMUP00000039977 I
ZBTB20 Meleagris gallopavo ENSMGAG00000014320 I
ZBTB20 Microcebus murinus ENSMICG00000008815 I
ZBTB20 Monodelphis domestica ENSMODG00000018181 I
ENSMPUG00000000272 Mustela putorius furo ENSMPUG00000000272 I
Zbtb20 Mus musculus ENSMUSG00000022708 I
Myotis_brandtii_ZBTB20_10031765 Myotis brandtii Myotis_brandtii_ZBTB20_10031765 I
ZBTB20 Myotis lucifugus ENSMLUG00000014239 I
ZBTB20 Oryctolagus cuniculus ENSOCUG00000004232 I
ENSORLG00000006797 Oryzias latipes ENSORLG00000006797 I
ZBTB20 Otolemur garnettii ENSOGAG00000029972 I
ZBTB20 Pan troglodytes ENSPTRG00000015244 I
ENSPANG00000015935 Papio anubis ENSPANG00000015935 I
Pvit_00937 Pogona vitticeps Pvit_00937 I
ENSPPYG00000013526 Pongo abelii ENSPPYG00000013526 I
Zbtb20 Rattus norvegicus ENSRNOG00000056716 I
ENSSHAG00000009719 Sarcophilus harrisii ENSSHAG00000009719 I
ZBTB20 Sorex araneus ENSSARG00000013404 I
ENSSSCG00000021456 Sus scrofa ENSSSCG00000021456 I
ZBTB20 Sus scrofa ENSSSCG00000026113 I
ZBTB20 Taeniopygia guttata ENSTGUG00000013404 I
zbtb20 Takifugu rubripes ENSTRUG00000016839 I
ENSTSYG00000009685 Tarsius syrichta ENSTSYG00000009685 I
zbtb20 Tetraodon nigroviridis ENSTNIG00000010038 I
ZBTB20 Tupaia belangeri ENSTBEG00000016630 I
XP_002939695 Xenopus tropicalis XP_002939695 I