Afo_R002575 (Aptenodytes forsteri)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Afo_R002575 T317723_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfkb2
M09356_2.00 		Mus musculus
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C 		0.805 0.805
NFKB2
M03446_2.00 		Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN		 SELEX
Jolma et al.(2013)
NFKB2_1 		0.793 0.793
NFKB2
M05699_2.00 		Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX 		0.793 0.793
NFKB2
M09344_2.00 		Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC		 Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B 		0.793 0.793
NFKB2
M05700_2.00 		Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD		 SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX 		0.793 0.793
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R002575 Rel 30 210

Links

Other Rel family TFs
Other Aptenodytes forsteri TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FGRRES_03322 Fusarium graminearum FGRRES_03322 N
FPSE_10432 Fusarium pseudograminearum FPSE_10432 N
NechaG105641 Fusarium solani NechaG105641 N
estExt_fgenesh1_pm.C_sca_39_chr11_5_00049 Nectria haematococca estExt_fgenesh1_pm.C_sca_39_chr11_5_00049 N
PMAA_026980 Penicillium marneffei PMAA_026980 N
PMAA_051670 Penicillium marneffei PMAA_051670 N
PFICI_04563 Pestalotiopsis fici PFICI_04563 N
PMAA_026980 Talaromyces marneffei PMAA_026980 N
PMAA_051670 Talaromyces marneffei PMAA_051670 N
VDAG_01690 Verticillium dahliae VDAG_01690 N