CC1G_00311 (Coprinopsis cinerea)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 CC1G_00311 T318058_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.653 0.430
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.653 0.430
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.653 0.430
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.653 0.430
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.653 0.430
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.652 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EAU84792 RFX 190 268

Links

Other RFX family TFs
Other Coprinopsis cinerea TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I
AT3G11280 Arabidopsis thaliana AT3G11280 D
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I
Bo1g141120 Brassica oleracea Bo1g141120 I
Bo5g136680 Brassica oleracea Bo5g136680 I
Bra034173 Brassica rapa Bra034173 I
Bra034853 Brassica rapa Bra034853 I
PK15104.1 Cannabis sativa PK15104.1 I
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I
Carubv10014411m.g Capsella rubella Carubv10014411m.g I
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I
Ca_12513 Cicer arietinum Ca_12513 I
Cla004397 Citrullus lanatus Cla004397 I
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I
Cucsa.164580 Cucumis sativus Cucsa.164580 I
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I
GLYMA14G06750 Glycine max GLYMA14G06750 I
GLYMA02G42140 Glycine max GLYMA02G42140 I
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I
Lus10009884.g Linum usitatissimum Lus10009884.g I
Lus10014837.g Linum usitatissimum Lus10014837.g I
MDP0000277813 Malus domestica MDP0000277813 I
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I
cassava26873.m1 Manihot esculenta cassava26873.m1 I
MTR_5g081860 Medicago truncatula MTR_5g081860 I
mgf010347m Mimulus guttatus mgf010347m I
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I
Pm018878 Prunus mume Pm018878 I
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I
29610.m000410 Ricinus communis 29610.m000410 I
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I
TCM_042604 Theobroma cacao TCM_042604 I
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I