ENSLOCG00000013505 (Lepisosteus oculatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSLOCG00000013505 T318304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.785 0.962
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.785 0.962
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.785 0.962
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.785 0.962
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.715 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.715 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.715 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.715 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.715 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.715 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.715 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.715 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.715 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.715 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.715 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.715 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.715 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.715 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.715 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000016649 RFX 98 176

Links

Other RFX family TFs
Other Lepisosteus oculatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005892 Aedes aegypti AAEL005892 N
ENSAMEG00000012079 Ailuropoda melanoleuca ENSAMEG00000012079 N
Alligator_sinensis_CCG008692.1 Alligator sinensis Alligator_sinensis_CCG008692.1 N
ZNF367 Anolis carolinensis ENSACAG00000012929 N
AALB010202 Anopheles albimanus AALB010202 N
AATE010533 Anopheles atroparvus AATE010533 N
ACUA017310 Anopheles culicifacies ACUA017310 N
AFAF012856 Anopheles farauti AFAF012856 N
AGAP010516 Anopheles gambiae AGAP010516 N
AMEM011646 Anopheles merus AMEM011646 N
ASTEI07114 Anopheles stephensi ASTEI07114 N
GB46246 Apis mellifera GB46246 N
Afo_R003052 Aptenodytes forsteri Afo_R003052 N
ENSAMXG00000021081 Astyanax mexicanus ENSAMXG00000021081 N
ACEP13151 Atta cephalotes ACEP13151 N
ENSP00000364405-D1 Bos grunniens ENSP00000364405-D1 N
ZNF367 Bos taurus ENSBTAG00000006587 N
estExt_fgenesh2_pg.C_2650031 Branchiostoma floridae estExt_fgenesh2_pg.C_2650031 N
Brh_R010325 Buceros rhinoceros Brh_R010325 N
ZNF367 Callithrix jacchus ENSCJAG00000012580 N
Aan_R012372 Calypte anna Aan_R012372 N
Aan_R014419 Calypte anna Aan_R014419 N
Cflo_01591--XP_624136.2_APIME Camponotus floridanus Cflo_01591--XP_624136.2_APIME N
ZNF367 Canis familiaris ENSCAFG00000001213 N
CapteG227287 Capitella teleta CapteG227287 N
Cmyd_10009010 Chelonia mydas Cmyd_10009010 N
ENSCSAG00000006700 Chlorocebus sabaeus ENSCSAG00000006700 N
ZNF367 Choloepus hoffmanni ENSCHOG00000008195 N
zf(c2h2)-76 Ciona intestinalis ENSCING00000023622 N
ENSCSAVG00000003922 Ciona savignyi ENSCSAVG00000003922 N
CGI_10028872 Crassostrea gigas CGI_10028872 N
znf367 Danio rerio ENSDARG00000021086 N
DAPPUDRAFT_51670 Daphnia pulex DAPPUDRAFT_51670 N
ZNF367 Dasypus novemcinctus ENSDNOG00000035249 N
YQE_09141 Dendroctonus ponderosae YQE_09141 N
ENSDORG00000010750 Dipodomys ordii ENSDORG00000010750 N
ZNF367 Echinops telfairi ENSETEG00000018547 N
ENSECAG00000009173 Equus caballus ENSECAG00000009173 N
ZNF367 Felis catus ENSFCAG00000015587 N
ENSFALG00000003343 Ficedula albicollis ENSFALG00000003343 N
ENSGMOG00000007617 Gadus morhua ENSGMOG00000007617 N
ZNF367 Gallus gallus ENSGALG00000012629 N
znf367 Gasterosteus aculeatus ENSGACG00000006715 N
Gfo_R009072 Geospiza fortis Gfo_R009072 N
ZNF367 Gorilla gorilla ENSGGOG00000012699 N
ZNF367 Homo sapiens ENSG00000165244 N
ENSSTOG00000005655 Ictidomys tridecemlineatus ENSSTOG00000005655 N
ISCW000539 Ixodes scapularis ISCW000539 N
ENSLACG00000011483 Latimeria chalumnae ENSLACG00000011483 N
ENSLOCG00000009209 Lepisosteus oculatus ENSLOCG00000009209 N
LDEC003543 Leptinotarsa decemlineata LDEC003543 N
LotgiG165679 Lottia gigantea LotgiG165679 N
ZNF367 Loxodonta africana ENSLAFG00000010427 N
ENSP00000364405 Macaca fascicularis ENSP00000364405 N
ZNF367 Macaca mulatta ENSMMUG00000007996 N
ENSMEUG00000009287 Macropus eugenii ENSMEUG00000009287 N
ZNF367 Meleagris gallopavo ENSMGAG00000006781 N
ENSMICG00000002011 Microcebus murinus ENSMICG00000002011 N
ZNF367 Monodelphis domestica ENSMODG00000000499 N
ENSMPUG00000006868 Mustela putorius furo ENSMPUG00000006868 N
Zfp367 Mus musculus ENSMUSG00000044934 N
Myotis_brandtii_Znf367_10015819 Myotis brandtii Myotis_brandtii_Znf367_10015819 N
ZNF367 Myotis lucifugus ENSMLUG00000017279 N
NV15465 Nasonia vitripennis NV15465 N
NEMVEDRAFT_v1g106775 Nematostella vectensis NEMVEDRAFT_v1g106775 N
ENSNLEG00000016813 Nomascus leucogenys ENSNLEG00000016813 N
ENSOPRG00000011725 Ochotona princeps ENSOPRG00000011725 N
ENSONIG00000015208 Oreochromis niloticus ENSONIG00000015208 N
ENSOCUG00000023005 Oryctolagus cuniculus ENSOCUG00000023005 N
znf367 Oryzias latipes ENSORLG00000003923 N
ZNF367 Otolemur garnettii ENSOGAG00000004337 N
ZNF367 Pan troglodytes ENSPTRG00000021153 N
ENSPANG00000024635 Papio anubis ENSPANG00000024635 N
ENSPSIG00000011709 Pelodiscus sinensis ENSPSIG00000011709 N
ENSPFOG00000007837 Poecilia formosa ENSPFOG00000007837 N
Pvit_09074 Pogona vitticeps Pvit_09074 N
ENSPPYG00000019416 Pongo abelii ENSPPYG00000019416 N
ZNF367 Pteropus vampyrus ENSPVAG00000007651 N
Zfp367 Rattus norvegicus ENSRNOG00000027234 N
Sakowv30026002m.g Saccoglossus kowalevskii Sakowv30026002m.g N
SINV17846 Solenopsis invicta SINV17846 N
ZNF367 Sorex araneus ENSSARG00000000827 N
ENSSSCG00000010933 Sus scrofa ENSSSCG00000010933 N
ZNF367 Taeniopygia guttata ENSTGUG00000000513 N
znf367 Takifugu rubripes ENSTRUG00000015325 N
znf367 Tetraodon nigroviridis ENSTNIG00000016674 N
TC016055 Tribolium castaneum TC016055 N
TriadG15889 Trichoplax adhaerens TriadG15889 N
ZNF367 Tupaia belangeri ENSTBEG00000002215 N
Tal_R006948 Tyto alba Tal_R006948 N
ZNF367 Vicugna pacos ENSVPAG00000002182 N
znf367.S Xenopus laevis XB-GENE-986041 N
znf367 Xenopus tropicalis XB-GENE-986040 N
ENSXMAG00000015989 Xiphophorus maculatus ENSXMAG00000015989 N
L798_11919 Zootermopsis nevadensis L798_11919 N