CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RFX6 *(Meleagris gallopavo)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	ENSMGAG00000013368	T318318_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Rfx6 M09365_2.00	Mus musculus	BDGTWKCYNDG	CHNRGMAACHV	Misc Kulakovskiy et al.(2013) RFX6_MOUSE.H11MO.0.C	0.794	0.987
RFX4 M02448_2.00	Cavia porcellus	GTHDYYNNGN	NCNNRRHDAC	PBM Weirauch et al.(2014) pTH9249	0.719	0.709
Rfx4 M00186_2.00	Mus musculus	GTHDYYNNSN	NSNNRRHDAC	PBM Badis et al.(2009) Rfx4_3761	0.719	0.709
RFX4 M03456_2.00	Homo sapiens	NGTWRYCATRGHWACN	NGTWDCYATGRYWACN	SELEX Jolma et al.(2013) RFX4_1	0.719	0.709
RFX4 M03457_2.00	Homo sapiens	NGTTGCYRRGCAACS	SGTTGCYYRGCAACN	SELEX Jolma et al.(2013) RFX4_2	0.719	0.709
RFX4 M05721_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_HT-SELEX	0.719	0.709
RFX4 M05722_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_Methyl-HT-SELEX	0.719	0.709
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.688	0.608
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.688	0.608
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.688	0.608
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.688	0.608
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.688	0.608
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.688	0.608
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.688	0.608
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.688	0.608
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.688	0.608
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.688	0.608
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.688	0.608
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.688	0.608
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.688	0.608
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.688	0.608
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.688	0.608
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.688	0.608
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.688	0.608
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.687	0.595
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.686	0.595
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.686	0.570
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.686	0.582
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.686	0.582
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.686	0.582
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.686	0.582
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.686	0.582
Rfx2 M03461_2.00	Mus musculus	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) Rfx2_1	0.682	0.608
Rfx2 M03462_2.00	Mus musculus	SGTTGCTARGCAACV	BGTTGCYTAGCAACS	SELEX Jolma et al.(2013) Rfx2_2	0.682	0.608
Rfx2 M05888_2.00	Mus musculus	NGTTRCYATGGHDAY	RTHDCCATRGYAACN	SMiLE-seq Isakova et al.(2017) RFX2	0.682	0.608
Rfx2 M09366_2.00	Mus musculus	NBYBGTYNCCMTGGCAACNSSS	SSSNGTTGCCAKGGNRACVRVN	Misc Kulakovskiy et al.(2013) RFX2_MOUSE.H11MO.0.A	0.682	0.608
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.681	0.595
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.681	0.595
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.681	0.595
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.681	0.595
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.681	0.595
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.681	0.595
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.681	0.595
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.681	0.595
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.681	0.595
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.681	0.544
RFX2 M03454_2.00	Homo sapiens	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) RFX2_1	0.680	0.595
RFX2 M03455_2.00	Homo sapiens	SGTTGCTARGCAACS	SGTTGCYTAGCAACS	SELEX Jolma et al.(2013) RFX2_2	0.680	0.595
RFX2 M05719_2.00	Homo sapiens	NGTWDYYATRRHWACN	NGTWDYYATRRHWACN	SELEX Yin et al.(2017) RFX2_eDBD_HT-SELEX	0.680	0.595
RFX2 M09362_2.00	Homo sapiens	YNGTTGCCATGGVRACVV	BBGTYBCCATGGCAACNR	Misc Kulakovskiy et al.(2013) RFX2_HUMAN.H11MO.0.A	0.680	0.595
RFX2 M09628_2.00	Homo sapiens	BGTTKCCATGGMAAC	GTTKCCATGGMAACV	Misc Heinz et al.(2010) LoVo-RFX2_GSE49402	0.680	0.595
RFX2 M05720_2.00	Homo sapiens	BGTTRCCATGRYAACV	BGTTRYCATGGYAACV	SELEX Yin et al.(2017) RFX2_eDBD_Methyl-HT-SELEX	0.680	0.595
PHUM046580 M02454_2.00	Pediculus humanus	NGTHDCYANV	BNTRGHDACN	PBM Weirauch et al.(2014) pTH9278	0.679	0.620
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSMGAP00000014124	RFX	58	136	TQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLGTRGHSKYHYYGIGIKE

Links
Other RFX family TFs
Other *Meleagris gallopavo* TFs

564 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Ca_13012	Cicer arietinum	Ca_13012	N
Cla019261	Citrullus lanatus	Cla019261	N
Ciclev10023578m.g	Citrus clementina	Ciclev10023578m.g	I
Cucsa.199090	Cucumis sativus	Cucsa.199090	N
Eucgr.B00724	Eucalyptus grandis	Eucgr.B00724	I
gene25163-v1.0-hybrid	Fragaria vesca	gene25163-v1.0-hybrid	I
GLYMA08G04610	Glycine max	GLYMA08G04610	N
GLYMA07G10240	Glycine max	GLYMA07G10240	I
GLYMA09G31650	Glycine max	GLYMA09G31650	N
Gorai.006G060900	Gossypium raimondii	Gorai.006G060900	I
MDP0000153949	Malus domestica	MDP0000153949	I
MDP0000246482	Malus domestica	MDP0000246482	I
cassava9086.m1	Manihot esculenta	cassava9086.m1	I
MTR_6g084430	Medicago truncatula	MTR_6g084430	N
GSMUA_Achr8G18420_001	Musa acuminata	GSMUA_Achr8G18420_001	I
GSMUA_Achr10G19900_001	Musa acuminata	GSMUA_Achr10G19900_001	I
POPTR_0015s03700	Populus trichocarpa	POPTR_0015s03700	I
POPTR_0012s05280	Populus trichocarpa	POPTR_0012s05280	I
Pm025184	Prunus mume	Pm025184	N
PRUPE_ppa007839mg	Prunus persica	PRUPE_ppa007839mg	I
29974.m000235	Ricinus communis	29974.m000235	I
SapurV1A.0719s0060	Salix purpurea	SapurV1A.0719s0060	I
SapurV1A.1146s0010	Salix purpurea	SapurV1A.1146s0010	I
SapurV1A.1381s0050	Salix purpurea	SapurV1A.1381s0050	I
SapurV1A.1381s0060	Salix purpurea	SapurV1A.1381s0060	I
Solyc12g036480.1	Solanum lycopersicum	Solyc12g036480.1	I
PGSC0003DMG400005384	Solanum tuberosum	PGSC0003DMG400005384	I

RFX6 (Meleagris gallopavo) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

564 Related TFs

RFX6 **(Meleagris gallopavo)
RFX**