RFX5 (Myotis lucifugus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMLUG00000015218 T318331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.782 0.975
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.782 0.975
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.782 0.975
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.782 0.975
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.782 0.975
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.782 0.975
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.782 0.975
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.782 0.975
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.782 0.975
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.782 0.975
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.782 0.975
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.782 0.975
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.782 0.975
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.782 0.975
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.782 0.975
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.705 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.705 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.705 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.705 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMLUP00000013865 RFX 91 170

Links

Other RFX family TFs
Other Myotis lucifugus TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10096 Aegilops tauschii F775_10096 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N
Al_scaffold_0007_233 Arabidopsis lyrata Al_scaffold_0007_233 N
BHLH131 Arabidopsis thaliana AT4G38070 N
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N
PK01498.1 Cannabis sativa PK01498.1 N
Ca_14981 Cicer arietinum Ca_14981 N
Cla022500 Citrullus lanatus Cla022500 N
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N
Thhalv10027500m.g Eutrema salsugineum Thhalv10027500m.g N
gene20797-v1.0-hybrid Fragaria vesca gene20797-v1.0-hybrid N
GLYMA14G36010 Glycine max GLYMA14G36010 N
GLYMA02G37720 Glycine max GLYMA02G37720 N
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N
MLOC_66385 Hordeum vulgare MLOC_66385 I
MLOC_12832 Hordeum vulgare MLOC_12832 N
LPERR08G12910 Leersia perrieri LPERR08G12910 I
LPERR09G06880 Leersia perrieri LPERR09G06880 I
Lus10003471.g Linum usitatissimum Lus10003471.g I
Lus10015734.g Linum usitatissimum Lus10015734.g I
Lus10042017.g Linum usitatissimum Lus10042017.g N
MDP0000562627 Malus domestica MDP0000562627 N
cassava34286.m1 Manihot esculenta cassava34286.m1 N
MTR_5g066080 Medicago truncatula MTR_5g066080 N
OBART08G15650 Oryza barthii OBART08G15650 I
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I
BGIOSGA029777 Oryza indica BGIOSGA029777 I
BGIOSGA026937 Oryza indica BGIOSGA026937 I
OMERI09G07780 Oryza meridionalis OMERI09G07780 I
OMERI08G12930 Oryza meridionalis OMERI08G12930 I
ONIVA09G09550 Oryza nivara ONIVA09G09550 I
ONIVA08G16750 Oryza nivara ONIVA08G16750 I
OPUNC08G13730 Oryza punctata OPUNC08G13730 I
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I
OS09G0410700 Oryza sativa OS09G0410700 I
OS08G0432800 Oryza sativa OS08G0432800 I
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N
29908.m006255 Ricinus communis 29908.m006255 N
Si030496m.g Setaria italica Si030496m.g N
Si013911m.g Setaria italica Si013911m.g I
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N
Sb07g021170 Sorghum bicolor Sb07g021170 I
Sb02g024460 Sorghum bicolor Sb02g024460 N
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N
GRMZM2G526668 Zea mays GRMZM2G526668 I
GRMZM2G176141 Zea mays GRMZM2G176141 N
GRMZM2G107276 Zea mays GRMZM2G107276 I