CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RFX1 *(Sus scrofa)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	ENSSSCG00000013764	T318510_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.781	1.000
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.781	1.000
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.781	1.000
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.781	1.000
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.781	1.000
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.781	1.000
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.781	1.000
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.781	1.000
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.781	1.000
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.781	1.000
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.781	1.000
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.775	0.861
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.775	0.886
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.775	0.886
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.775	0.886
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.773	0.848
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.772	0.886
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.772	0.886
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.771	0.835
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.770	0.797
Rfx M03959_2.00	Drosophila melanogaster	NGTHRCYATRGYDACN	NGTHRCYATRGYDACN	SELEX Nitta et al.(2015) Rfx_1	0.762	0.810
Rfx M03960_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_2	0.762	0.810
Rfx M03961_2.00	Drosophila melanogaster	BGTWRCCATGGYWACV	BGTWRCCATGGYWACV	SELEX Nitta et al.(2015) Rfx_3	0.762	0.810
Rfx M03962_2.00	Drosophila melanogaster	GTTRCYAWTRGYAAC	GTTRCYAWTRGYAAC	SELEX Nitta et al.(2015) Rfx_4	0.762	0.810
Rfx M03963_2.00	Drosophila melanogaster	GTTGCTARGCAAC	GTTGCYTAGCAAC	SELEX Nitta et al.(2015) Rfx_5	0.762	0.810
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.762	0.835
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.762	0.835
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.762	0.835
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.762	0.835
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.762	0.835
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.762	0.835
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.762	0.835
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.762	0.835
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.762	0.835
Rfx2 M03461_2.00	Mus musculus	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) Rfx2_1	0.761	0.848
Rfx2 M03462_2.00	Mus musculus	SGTTGCTARGCAACV	BGTTGCYTAGCAACS	SELEX Jolma et al.(2013) Rfx2_2	0.761	0.848
Rfx2 M05888_2.00	Mus musculus	NGTTRCYATGGHDAY	RTHDCCATRGYAACN	SMiLE-seq Isakova et al.(2017) RFX2	0.761	0.848
Rfx2 M09366_2.00	Mus musculus	NBYBGTYNCCMTGGCAACNSSS	SSSNGTTGCCAKGGNRACVRVN	Misc Kulakovskiy et al.(2013) RFX2_MOUSE.H11MO.0.A	0.761	0.848
RFX2 M03454_2.00	Homo sapiens	BGTTRCCATGGYAACV	BGTTRCCATGGYAACV	SELEX Jolma et al.(2013) RFX2_1	0.759	0.835
RFX2 M03455_2.00	Homo sapiens	SGTTGCTARGCAACS	SGTTGCYTAGCAACS	SELEX Jolma et al.(2013) RFX2_2	0.759	0.835
RFX2 M05719_2.00	Homo sapiens	NGTWDYYATRRHWACN	NGTWDYYATRRHWACN	SELEX Yin et al.(2017) RFX2_eDBD_HT-SELEX	0.759	0.835
RFX2 M09362_2.00	Homo sapiens	YNGTTGCCATGGVRACVV	BBGTYBCCATGGCAACNR	Misc Kulakovskiy et al.(2013) RFX2_HUMAN.H11MO.0.A	0.759	0.835
RFX2 M09628_2.00	Homo sapiens	BGTTKCCATGGMAAC	GTTKCCATGGMAACV	Misc Heinz et al.(2010) LoVo-RFX2_GSE49402	0.759	0.835
RFX2 M05720_2.00	Homo sapiens	BGTTRCCATGRYAACV	BGTTRYCATGGYAACV	SELEX Yin et al.(2017) RFX2_eDBD_Methyl-HT-SELEX	0.759	0.835
PHUM046580 M02454_2.00	Pediculus humanus	NGTHDCYANV	BNTRGHDACN	PBM Weirauch et al.(2014) pTH9278	0.757	0.848
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.743	0.709
RFX4 M02448_2.00	Cavia porcellus	GTHDYYNNGN	NCNNRRHDAC	PBM Weirauch et al.(2014) pTH9249	0.712	0.646
Rfx4 M00186_2.00	Mus musculus	GTHDYYNNSN	NSNNRRHDAC	PBM Badis et al.(2009) Rfx4_3761	0.712	0.646
RFX4 M03456_2.00	Homo sapiens	NGTWRYCATRGHWACN	NGTWDCYATGRYWACN	SELEX Jolma et al.(2013) RFX4_1	0.712	0.646
RFX4 M03457_2.00	Homo sapiens	NGTTGCYRRGCAACS	SGTTGCYYRGCAACN	SELEX Jolma et al.(2013) RFX4_2	0.712	0.646
RFX4 M05721_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_HT-SELEX	0.712	0.646
RFX4 M05722_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX4_eDBD_Methyl-HT-SELEX	0.712	0.646
Rfx6 M09365_2.00	Mus musculus	BDGTWKCYNDG	CHNRGMAACHV	Misc Kulakovskiy et al.(2013) RFX6_MOUSE.H11MO.0.C	0.691	0.620
RFX1 M00066_2.00	Saccharomyces cerevisiae	NSGTTGCYAN	NTRGCAACSN	PBM Badis et al.(2008) RFX1_4537	0.652	0.418
RFX1 M07494_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0365.1	0.652	0.418
RFX1 M08600_2.00	Saccharomyces cerevisiae	CGTYRBYAYRGYWACM	KGTWRCYRTRVYRACG	Misc DeBoer et al.(2011) YLR176C_1478	0.652	0.418
RFX1 M08601_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	Misc DeBoer et al.(2011) YLR176C_496	0.652	0.418
RFX1 M11251_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RFX1_02	0.652	0.418
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSSSCP00000014633	RFX	429	507	SPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA

Links
Other RFX family TFs
Other *Sus scrofa* TFs

729 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000011926	Ailuropoda melanoleuca	ENSAMEG00000011926	N
ENSAMEG00000016669	Ailuropoda melanoleuca	ENSAMEG00000016669	I
Alligator_sinensis_CCG012901.1	Alligator sinensis	Alligator_sinensis_CCG012901.1	I
ENSAPLG00000006054	Anas platyrhynchos	ENSAPLG00000006054	I
MYRF	Anolis carolinensis	ENSACAG00000017691	I
Afo_R010549	Aptenodytes forsteri	Afo_R010549	I
ENSAMXG00000015793	Astyanax mexicanus	ENSAMXG00000015793	I
ENSBTAP00000009187-D1	Bos grunniens	ENSBTAP00000009187-D1	I
MYRF	Bos taurus	ENSBTAG00000006990	I
Brh_R007745	Buceros rhinoceros	Brh_R007745	I
MYRF	Callithrix jacchus	ENSCJAG00000019218	I
Aan_R010750	Calypte anna	Aan_R010750	I
MYRF	Canis familiaris	ENSCAFG00000016062	I
MYRF	Cavia porcellus	ENSCPOG00000013543	I
Cmyd_10008461	Chelonia mydas	Cmyd_10008461	I
ENSCSAG00000006452	Chlorocebus sabaeus	ENSCSAG00000006452	I
ENSCING00000025073	Ciona intestinalis	ENSCING00000025073	N
myrf	Danio rerio	ENSDARG00000078676	D
MYRF	Dasypus novemcinctus	ENSDNOG00000005294	I
Myrf	Dipodomys ordii	ENSDORG00000002029	I
MYRF	Equus caballus	ENSECAG00000021799	I
MYRF	Felis catus	ENSFCAG00000013683	I
ENSFALG00000011806	Ficedula albicollis	ENSFALG00000011806	I
ENSGMOG00000017696	Gadus morhua	ENSGMOG00000017696	I
ENSGALG00000020522	Gallus gallus	ENSGALG00000020522	I
myrf	Gasterosteus aculeatus	ENSGACG00000005416	I
Gfo_R011942	Geospiza fortis	Gfo_R011942	I
MYRF	Gorilla gorilla	ENSGGOG00000012529	I
MYRF	Homo sapiens	ENSG00000124920	D
ENSSTOG00000000529	Ictidomys tridecemlineatus	ENSSTOG00000000529	I
ENSLOCG00000016212	Lepisosteus oculatus	ENSLOCG00000016212	N
ENSLOCG00000000407	Lepisosteus oculatus	ENSLOCG00000000407	I
ENSP00000278836	Macaca fascicularis	ENSP00000278836	I
ENSMMUG00000006501	Macaca mulatta	ENSMMUG00000006501	I
MYRF	Macaca mulatta	ENSMMUG00000006655	I
ENSMEUG00000004200	Macropus eugenii	ENSMEUG00000004200	I
MYRF	Meleagris gallopavo	ENSMGAG00000004733	I
MYRFL	Monodelphis domestica	ENSMODG00000020385	N
ENSMPUG00000017495	Mustela putorius furo	ENSMPUG00000017495	N
ENSMPUG00000014126	Mustela putorius furo	ENSMPUG00000014126	I
Myrf	Mus musculus	ENSMUSG00000036098	D
MYRF	Myotis lucifugus	ENSMLUG00000010326	I
ENSNLEG00000003069	Nomascus leucogenys	ENSNLEG00000003069	I
Ogr07579	Ophisaurus gracilis	Ogr07579	N
ENSONIG00000015523	Oreochromis niloticus	ENSONIG00000015523	I
MYRF	Ornithorhynchus anatinus	ENSOANG00000003410	I
MYRF	Oryctolagus cuniculus	ENSOCUG00000003269	I
MYRF	Oryzias latipes	ENSORLG00000006459	I
MYRF	Otolemur garnettii	ENSOGAG00000010786	I
ENSOARG00000013482	Ovis aries	ENSOARG00000013482	I
ENSOARG00000020232	Ovis aries	ENSOARG00000020232	I
MYRF	Pan troglodytes	ENSPTRG00000003749	I
ENSPANG00000013413	Papio anubis	ENSPANG00000013413	I
ENSPSIG00000015590	Pelodiscus sinensis	ENSPSIG00000015590	I
ENSPFOG00000011050	Poecilia formosa	ENSPFOG00000011050	I
Pvit_15884	Pogona vitticeps	Pvit_15884	I
ENSPPYG00000003180	Pongo abelii	ENSPPYG00000003180	I
MYRF	Procavia capensis	ENSPCAG00000017079	I
MYRF	Pteropus vampyrus	ENSPVAG00000012342	I
Myrf	Rattus norvegicus	ENSRNOG00000028274	I
ENSSHAG00000002443	Sarcophilus harrisii	ENSSHAG00000002443	I
SPU_000601	Strongylocentrotus purpuratus	SPU_000601	I
MYRF	Sus scrofa	ENSSSCG00000013078	I
ENSTGUG00000006600	Taeniopygia guttata	ENSTGUG00000006600	I
MYRF	Takifugu rubripes	ENSTRUG00000005197	I
MYRF	Tetraodon nigroviridis	ENSTNIG00000016074	I
Tal_R006175	Tyto alba	Tal_R006175	I
myrf.L	Xenopus laevis	XB-GENE-1020972	I
myrf	Xenopus tropicalis	XB-GENE-1020968	I
ENSXMAG00000003748	Xiphophorus maculatus	ENSXMAG00000003748	I

RFX1 (Sus scrofa) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

729 Related TFs

RFX1 **(Sus scrofa)
RFX**