GSTUM_00005211001 (Tuber melanosporum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 GSTUM_00005211001 T318630_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.654 0.478
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.654 0.478
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.654 0.478
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.654 0.478
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.654 0.478
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAZ81462 RFX 220 289

Links

Other RFX family TFs
Other Tuber melanosporum TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004221 Ailuropoda melanoleuca ENSAMEG00000004221 N
ENSAPLG00000008031 Anas platyrhynchos ENSAPLG00000008031 I
RBPJL Anolis carolinensis ENSACAG00000012362 I
Afo_R002493 Aptenodytes forsteri Afo_R002493 I
ENSP00000341243-D1 Bos grunniens ENSP00000341243-D1 I
RBPJL Bos taurus ENSBTAG00000011283 I
BTMF_0000429201 Brugia timori BTMF_0000429201 I
RBPJL Callithrix jacchus ENSCJAG00000017526 I
RBPJL Canis familiaris ENSCAFG00000009670 I
RBPJL Cavia porcellus ENSCPOG00000020407 I
Cmyd_10015219 Chelonia mydas Cmyd_10015219 I
ENSCSAG00000014350 Chlorocebus sabaeus ENSCSAG00000014350 I
ENSCHOG00000000749 Choloepus hoffmanni ENSCHOG00000000749 I
RBPJL Dasypus novemcinctus ENSDNOG00000011919 I
RBPJL Echinops telfairi ENSETEG00000005066 I
RBPJL Equus caballus ENSECAG00000013463 I
RBPJL Erinaceus europaeus ENSEEUG00000013039 I
RBPJL Felis catus ENSFCAG00000009812 I
ENSFALG00000005428 Ficedula albicollis ENSFALG00000005428 I
RBPJL Gallus gallus ENSGALG00000003952 I
Gfo_R005402 Geospiza fortis Gfo_R005402 I
RBPJL Gorilla gorilla ENSGGOG00000004147 I
RBPJL Homo sapiens ENSG00000124232 I
RBPJL Loxodonta africana ENSLAFG00000008148 I
ENSP00000341243 Macaca fascicularis ENSP00000341243 I
RBPJL Macaca mulatta ENSMMUG00000003404 I
RBPJL Meleagris gallopavo ENSMGAG00000017264 I
RBPJL Microcebus murinus ENSMICG00000014225 I
RBPJL Monodelphis domestica ENSMODG00000016187 I
ENSMPUG00000017637 Mustela putorius furo ENSMPUG00000017637 I
Rbpjl Mus musculus ENSMUSG00000017007 D
Myotis_brandtii_RBPJL_10002478 Myotis brandtii Myotis_brandtii_RBPJL_10002478 I
RBPJL Myotis lucifugus ENSMLUG00000005893 I
Ogr10601 Ophisaurus gracilis Ogr10601 I
RBPJL Oryctolagus cuniculus ENSOCUG00000009087 I
RBPJL Otolemur garnettii ENSOGAG00000024900 I
ENSOARG00000005105 Ovis aries ENSOARG00000005105 I
RBPJL Pan troglodytes ENSPTRG00000013542 I
ENSPSIG00000014017 Pelodiscus sinensis ENSPSIG00000014017 I
Pvit_08747 Pogona vitticeps Pvit_08747 I
RBPJL Pteropus vampyrus ENSPVAG00000008751 I
Rbpjl Rattus norvegicus ENSRNOG00000026295 I
ENSSHAG00000013207 Sarcophilus harrisii ENSSHAG00000013207 I
RBPJL Taeniopygia guttata ENSTGUG00000005009 I
RBPJL Tursiops truncatus ENSTTRG00000013806 I