Ca_16243 (Cicer arietinum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ca_16243 T323174_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.962 0.747
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.962 0.747
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.962 0.747
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.961 0.800
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.948 0.773
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.945 0.733
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.937 0.747
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.936 0.747
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.936 0.747
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.936 0.747
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.935 0.760
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.929 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.929 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.929 0.720
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.927 0.707
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.927 0.733
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.922 0.733
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.922 0.733
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.922 0.733
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.920 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_16243 SBP 71 145

Links

Other SBP family TFs
Other Cicer arietinum TFs

455 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I
AT3G11280 Arabidopsis thaliana AT3G11280 D
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I
Bo1g141120 Brassica oleracea Bo1g141120 I
Bo5g136680 Brassica oleracea Bo5g136680 I
Bra034173 Brassica rapa Bra034173 I
Bra034853 Brassica rapa Bra034853 I
PK15104.1 Cannabis sativa PK15104.1 I
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I
Carubv10014411m.g Capsella rubella Carubv10014411m.g I
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I
Ca_12513 Cicer arietinum Ca_12513 I
Cla004397 Citrullus lanatus Cla004397 I
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I
Cucsa.164580 Cucumis sativus Cucsa.164580 I
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I
GLYMA14G06750 Glycine max GLYMA14G06750 I
GLYMA02G42140 Glycine max GLYMA02G42140 I
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I
Lus10009884.g Linum usitatissimum Lus10009884.g I
Lus10014837.g Linum usitatissimum Lus10014837.g I
MDP0000277813 Malus domestica MDP0000277813 I
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I
cassava26873.m1 Manihot esculenta cassava26873.m1 I
MTR_5g081860 Medicago truncatula MTR_5g081860 I
mgf010347m Mimulus guttatus mgf010347m I
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I
Pm018878 Prunus mume Pm018878 I
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I
29610.m000410 Ricinus communis 29610.m000410 I
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I
TCM_042604 Theobroma cacao TCM_042604 I
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I