Pavir.J02262 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J02262 T323641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.946 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J02262.1.p SBP 89 163

Links

Other SBP family TFs
Other Panicum virgatum TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M378DRAFT_75687 Amanita muscaria M378DRAFT_75687 N
CERSUDRAFT_137619 Ceriporiopsis subvermispora CERSUDRAFT_137619 N
DICSQDRAFT_64693 Dichomitus squalens DICSQDRAFT_64693 N
FIBRA_07605 Fibroporia radiculosa FIBRA_07605 N
FOMPIDRAFT_1116385 Fomitopsis pinicola FOMPIDRAFT_1116385 N
GALMADRAFT_246384 Galerina marginata GALMADRAFT_246384 N
GLOTRDRAFT_65551 Gloeophyllum trabeum GLOTRDRAFT_65551 N
GYMLUDRAFT_50070 Gymnopus luxurians GYMLUDRAFT_50070 N
M413DRAFT_18957 Hebeloma cylindrosporum M413DRAFT_18957 N
HETIRDRAFT_479833 Heterobasidion irregulare HETIRDRAFT_479833 N
HYDPIDRAFT_99795 Hydnomerulius pinastri HYDPIDRAFT_99795 N
JAAARDRAFT_38766 Jaapia argillacea JAAARDRAFT_38766 N
K443DRAFT_129361 Laccaria amethystina K443DRAFT_129361 N
LACBIDRAFT_317073 Laccaria bicolor LACBIDRAFT_317073 N
Moror_4655 Moniliophthora roreri Moror_4655 N
PAXRUDRAFT_144589 Paxillus rubicundulus PAXRUDRAFT_144589 N
PHACADRAFT_254069 Phanerochaete carnosa PHACADRAFT_254069 N
fgenesh1_pg.C_scaffold_5000072 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_5000072 N
PHLGIDRAFT_78080 Phlebiopsis gigantea PHLGIDRAFT_78080 N
PISMIDRAFT_672167 Pisolithus microcarpus PISMIDRAFT_672167 N
M404DRAFT_15942 Pisolithus tinctorius M404DRAFT_15942 N
PLEOSDRAFT_1073145 Pleurotus ostreatus PLEOSDRAFT_1073145 N
POSPLDRAFT_100778 Postia placenta POSPLDRAFT_100778 N
SCHCODRAFT_257495 Schizophyllum commune SCHCODRAFT_257495 N
SCLCIDRAFT_114536 Scleroderma citrinum SCLCIDRAFT_114536 N
M408DRAFT_28343 Serendipita vermifera M408DRAFT_28343 N
SERLA73DRAFT_117697 Serpula lacrymans SERLA73DRAFT_117697 N
CY34DRAFT_772225 Suillus luteus CY34DRAFT_772225 N