Pavir.J02262 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J02262 T323641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.946 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J02262.1.p SBP 89 163

Links

Other SBP family TFs
Other Panicum virgatum TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si001804m.g Setaria italica Si001804m.g I 0.986
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.986
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.978
SPL19 Oryza sativa OS11G0496600 I 0.978
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.975
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.975
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.975
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.975
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.975
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.975
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.975
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.975
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.973
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.973
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.972
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.972
Cla001541 Citrullus lanatus Cla001541 I 0.971
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.971
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.969
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.969
Pm025028 Prunus mume Pm025028 I 0.969
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.969
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.969
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.969
Bo3g042890 Brassica oleracea Bo3g042890 I 0.968
OBART01G42150 Oryza barthii OBART01G42150 I 0.968
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.967
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.967
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.967
TCM_011483 Theobroma cacao TCM_011483 I 0.967
OS01G0922600 Oryza sativa OS01G0922600 I 0.966
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.964
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.961
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.961
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.961
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.961
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.959
Si013747m.g Setaria italica Si013747m.g N 0.959
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.959
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.959
TCM_008671 Theobroma cacao TCM_008671 I 0.958
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.958
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.958
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.958
MDP0000119458 Malus domestica MDP0000119458 I 0.958
MDP0000193702 Malus domestica MDP0000193702 I 0.958
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.958
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.958
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.958
Cla018827 Citrullus lanatus Cla018827 I 0.956
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.955
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.955
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.955
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.955
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.954
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.954
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.954
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.954
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.954
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.954
TCM_014330 Theobroma cacao TCM_014330 I 0.954
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.954
Ca_19449 Cicer arietinum Ca_19449 I 0.954
Cla019331 Citrullus lanatus Cla019331 I 0.954
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.954
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.954
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.954
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.954
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.954
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.954
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.954
PK19500.1 Cannabis sativa PK19500.1 I 0.954
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.953
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.953
30138.m003942 Ricinus communis 30138.m003942 I 0.953
30174.m009082 Ricinus communis 30174.m009082 I 0.953
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.953
MDP0000146640 Malus domestica MDP0000146640 I 0.953
MDP0000778465 Malus domestica MDP0000778465 I 0.953
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.952
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.952
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.952
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.951
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.951
Ca_05711 Cicer arietinum Ca_05711 I 0.951
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.951
PK02140.1 Cannabis sativa PK02140.1 I 0.951
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.950
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.950
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.950
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.950
PK17790.1 Cannabis sativa PK17790.1 I 0.950
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.949
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.949
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.949
Si026656m.g Setaria italica Si026656m.g I 0.949
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.949
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.949
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.949
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.949
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.949
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.948
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.948
Cla002666 Citrullus lanatus Cla002666 I 0.948
Pm024528 Prunus mume Pm024528 I 0.948
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.948
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.948
Bo9g097630 Brassica oleracea Bo9g097630 I 0.947
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.947
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.947
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.947
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.947
SPL13A Arabidopsis thaliana AT5G50570 I 0.946
SPL13A Arabidopsis thaliana AT5G50670 D 0.946
Bo3g024180 Brassica oleracea Bo3g024180 I 0.946
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.946
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.946
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.946
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.946
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.946
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.946
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.945
Bra022766 Brassica rapa Bra022766 I 0.944
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.944
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.944
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.944
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.944
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.944
Ca_01426 Cicer arietinum Ca_01426 I 0.944
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.944
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.944
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.943
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.943
SPL6 Arabidopsis thaliana AT1G69170 I 0.942
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.942
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.941
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.941
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.941
Cla019579 Citrullus lanatus Cla019579 I 0.941
29929.m004627 Ricinus communis 29929.m004627 I 0.939
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.938
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.938
Pm030597 Prunus mume Pm030597 I 0.938
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.937
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.936
MDP0000171877 Malus domestica MDP0000171877 I 0.936
MDP0000246046 Malus domestica MDP0000246046 I 0.936
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.936
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.935
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.935
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.934
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.934
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.934
TCM_014668 Theobroma cacao TCM_014668 I 0.933
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.933
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.933
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.933
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.931
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.931
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.931
MDP0000589558 Malus domestica MDP0000589558 I 0.931
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.930
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.930
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.930
Ca_24655 Cicer arietinum Ca_24655 I 0.930
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.930
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.930
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.928
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.927
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.926
Bra038324 Brassica rapa Bra038324 I 0.924
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.924
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.924
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.924
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.924
SPL16 Oryza sativa OS08G0531600 I 0.924
Si010262m.g Setaria italica Si010262m.g I 0.924
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.922
Bo2g062840 Brassica oleracea Bo2g062840 I 0.921
F775_02791 Aegilops tauschii F775_02791 I 0.921
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.921
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.921
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.921
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.921
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.921
30147.m014478 Ricinus communis 30147.m014478 I 0.920
MDP0000142582 Malus domestica MDP0000142582 N 0.919
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.918
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.918
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.917
Si032170m.g Setaria italica Si032170m.g I 0.917
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.916
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.913
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.913
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.913
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.913
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.913
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.913
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.913
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.912
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.912
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.910
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.910
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.910
TCM_017247 Theobroma cacao TCM_017247 N 0.909
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.907
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.907
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.906
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.906
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.905
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.904
PK03565.1 Cannabis sativa PK03565.1 I 0.904
OB04G27960 Oryza brachyantha OB04G27960 I 0.903
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.902
OBART04G20940 Oryza barthii OBART04G20940 I 0.902
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.902
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.902
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.902
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.902
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.902
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.902
SPL7 Oryza sativa OS04G0551500 I 0.902
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.900
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.900
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.899
Pm010075 Prunus mume Pm010075 I 0.899
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.899
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.899
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.899
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.899
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.898
OBART07G15570 Oryza barthii OBART07G15570 I 0.898
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.898
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.898
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.898
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.898
Bo6g031220 Brassica oleracea Bo6g031220 I 0.897
Bra039656 Brassica rapa Bra039656 I 0.897
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.897
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.897
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.895
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.895
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.895
Ca_24733 Cicer arietinum Ca_24733 I 0.895
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.895
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.894
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.894
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.893
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.893
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.892
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.892
MDP0000263766 Malus domestica MDP0000263766 I 0.891
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.890
OBART09G15750 Oryza barthii OBART09G15750 I 0.890
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.890
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.890
SPL18 Oryza sativa OS09G0507100 I 0.890
mgf003797m Mimulus guttatus mgf003797m I 0.890
mgf010913m Mimulus guttatus mgf010913m I 0.890
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.890
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.890
Bo6g108620 Brassica oleracea Bo6g108620 N 0.889
OGLUM11G13820 Oryza glumaepatula OGLUM11G13820 N 0.889
Bra004363 Brassica rapa Bra004363 N 0.888
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.888
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.888
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.888
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.888
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.888
Pm007035 Prunus mume Pm007035 I 0.887
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.887
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.887
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.887
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.886
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.886
Si013151m.g Setaria italica Si013151m.g I 0.886
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.886
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.886
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.886