Bo3g042890 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo3g042890 T322431_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.977 0.960
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.887 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g042890.1 SBP 104 178

Links

Other SBP family TFs
Other Brassica oleracea TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.979
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.979
SPL13A Arabidopsis thaliana AT5G50570 I 0.977
SPL13A Arabidopsis thaliana AT5G50670 D 0.977
Bo3g024180 Brassica oleracea Bo3g024180 I 0.977
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.977
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.977
Bo9g097630 Brassica oleracea Bo9g097630 I 0.976
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.976
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.975
Cla001541 Citrullus lanatus Cla001541 I 0.974
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.974
Bra022766 Brassica rapa Bra022766 I 0.973
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.972
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.972
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.971
30138.m003942 Ricinus communis 30138.m003942 I 0.971
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.971
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.970
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.970
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.970
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.970
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.970
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.970
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.970
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.970
TCM_014330 Theobroma cacao TCM_014330 I 0.970
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.970
Ca_19449 Cicer arietinum Ca_19449 I 0.970
Cla018827 Citrullus lanatus Cla018827 I 0.970
Cla019331 Citrullus lanatus Cla019331 I 0.970
30174.m009082 Ricinus communis 30174.m009082 I 0.970
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.970
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.970
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.970
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.970
MDP0000146640 Malus domestica MDP0000146640 I 0.970
MDP0000778465 Malus domestica MDP0000778465 I 0.970
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.970
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.969
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.969
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.969
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.969
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.968
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.968
Si001804m.g Setaria italica Si001804m.g I 0.968
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.968
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.968
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.968
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.966
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.966
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.965
TCM_008671 Theobroma cacao TCM_008671 I 0.964
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.964
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.964
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.964
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.963
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.963
SPL19 Oryza sativa OS11G0496600 I 0.963
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.962
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.962
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.961
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.961
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.961
Cla002666 Citrullus lanatus Cla002666 I 0.961
Pm024528 Prunus mume Pm024528 I 0.961
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.961
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.961
PK17790.1 Cannabis sativa PK17790.1 I 0.961
Pm025028 Prunus mume Pm025028 I 0.960
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.959
PK02140.1 Cannabis sativa PK02140.1 I 0.959
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.958
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.958
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.958
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.958
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.958
Ca_01426 Cicer arietinum Ca_01426 I 0.958
Ca_05711 Cicer arietinum Ca_05711 I 0.958
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.958
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.958
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.958
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.958
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.957
Ca_24655 Cicer arietinum Ca_24655 I 0.957
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.957
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.957
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.957
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.957
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.957
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.957
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.956
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.956
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.956
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.955
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.955
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.955
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.954
TCM_011483 Theobroma cacao TCM_011483 I 0.954
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.954
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.954
MDP0000589558 Malus domestica MDP0000589558 I 0.954
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.954
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.953
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.953
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.952
PK19500.1 Cannabis sativa PK19500.1 I 0.952
Cla019579 Citrullus lanatus Cla019579 I 0.951
TCM_014668 Theobroma cacao TCM_014668 I 0.950
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.950
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.950
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.950
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.949
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.947
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.946
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.946
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.946
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.946
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.946
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.946
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.946
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.946
MDP0000119458 Malus domestica MDP0000119458 I 0.945
MDP0000193702 Malus domestica MDP0000193702 I 0.945
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.944
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.942
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.942
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.941
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.941
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.940
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.940
PK03565.1 Cannabis sativa PK03565.1 I 0.940
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.939
29929.m004627 Ricinus communis 29929.m004627 I 0.939
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.938
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.938
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.937
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.937
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.937
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.937
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.936
OS01G0922600 Oryza sativa OS01G0922600 I 0.936
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.935
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.934
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.933
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.932
OB04G27960 Oryza brachyantha OB04G27960 I 0.932
OBART04G20940 Oryza barthii OBART04G20940 I 0.932
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.932
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.932
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.932
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.932
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.932
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.932
SPL7 Oryza sativa OS04G0551500 I 0.932
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.931
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.930
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.930
OBART01G42150 Oryza barthii OBART01G42150 I 0.929
30147.m014478 Ricinus communis 30147.m014478 I 0.929
Bo6g031220 Brassica oleracea Bo6g031220 I 0.927
Bra039656 Brassica rapa Bra039656 I 0.927
MDP0000171877 Malus domestica MDP0000171877 I 0.927
MDP0000246046 Malus domestica MDP0000246046 I 0.927
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.926
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.926
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.925
Si013747m.g Setaria italica Si013747m.g N 0.924
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.924
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.924
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.924
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.924
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.923
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.923
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.922
Si026656m.g Setaria italica Si026656m.g I 0.922
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.922
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.922
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.921
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.920
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.919
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.919
Pm030597 Prunus mume Pm030597 I 0.919
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.919
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.919
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.917
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.917
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.917
Pm010075 Prunus mume Pm010075 I 0.917
MDP0000263766 Malus domestica MDP0000263766 I 0.917
SPL6 Arabidopsis thaliana AT1G69170 I 0.916
GLYMA06G22545 Glycine max GLYMA06G22545 N 0.916
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.916
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.916
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.916
MDP0000142582 Malus domestica MDP0000142582 N 0.914
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.912
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.912
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.912
Bo5g127310 Brassica oleracea Bo5g127310 I 0.911
Bra027265 Brassica rapa Bra027265 I 0.911
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.910
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.908
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.908
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.908
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.907
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.906
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.905
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.904
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.904
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.903
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.902
Pm007035 Prunus mume Pm007035 I 0.902
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.901
Si032170m.g Setaria italica Si032170m.g I 0.901
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.900
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.900
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.900
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.900
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.900
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.899
Bo2g062840 Brassica oleracea Bo2g062840 I 0.898
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.898
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.898
Pm014154 Prunus mume Pm014154 I 0.898
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.897
TCM_017247 Theobroma cacao TCM_017247 N 0.897
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.897
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.897
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.896
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.895
F775_27970 Aegilops tauschii F775_27970 I 0.895
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.895
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.895
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.895
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.895
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.895
Bra038324 Brassica rapa Bra038324 I 0.894
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.894
Bra038101 Brassica rapa Bra038101 I 0.893
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.893
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.893
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.893
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.892
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.892
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.892
SPL15 Oryza indica BGIOSGA028994 I 0.891
OBART08G20320 Oryza barthii OBART08G20320 I 0.891
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.891
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.891
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.891
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.891
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.891
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.891
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.891
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.890
MDP0000176265 Malus domestica MDP0000176265 I 0.890
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.889
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.888
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.888
OBART07G15570 Oryza barthii OBART07G15570 I 0.888
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.888
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.888
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.888
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.888
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.888
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.887
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.887
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.887
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.887
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.887
Pm016138 Prunus mume Pm016138 I 0.887
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.887
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.887
Ca_10879 Cicer arietinum Ca_10879 I 0.886
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.886