PGSC0003DMG400028308 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400028308 T322934_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.938 0.720
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.909 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400072745 SBP 234 308
PGSC0003DMT400072746 SBP 234 308

Links

Other SBP family TFs
Other Solanum tuberosum TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.985
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.970
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.958
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.958
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.958
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.958
Pm025028 Prunus mume Pm025028 I 0.955
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.954
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.954
TCM_014330 Theobroma cacao TCM_014330 I 0.954
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.954
Cla019331 Citrullus lanatus Cla019331 I 0.954
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.954
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.954
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.953
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.953
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.953
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.953
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.953
TCM_011483 Theobroma cacao TCM_011483 I 0.953
Ca_19449 Cicer arietinum Ca_19449 I 0.953
30138.m003942 Ricinus communis 30138.m003942 I 0.953
30174.m009082 Ricinus communis 30174.m009082 I 0.953
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.953
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.953
MDP0000146640 Malus domestica MDP0000146640 I 0.953
MDP0000778465 Malus domestica MDP0000778465 I 0.953
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.952
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.952
PK19500.1 Cannabis sativa PK19500.1 I 0.952
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.951
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.951
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.951
Cla018827 Citrullus lanatus Cla018827 I 0.951
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.951
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.950
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.950
PK17790.1 Cannabis sativa PK17790.1 I 0.950
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.949
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.949
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.949
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.949
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.949
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.948
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.947
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.946
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.946
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.945
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.945
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.944
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.944
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.944
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.944
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.944
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.943
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.943
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.943
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.942
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.941
TCM_008671 Theobroma cacao TCM_008671 I 0.941
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.941
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.941
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.940
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.940
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.940
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.940
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.940
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.940
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.940
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.940
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.940
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.940
Si026656m.g Setaria italica Si026656m.g I 0.940
TCM_014668 Theobroma cacao TCM_014668 I 0.940
MDP0000119458 Malus domestica MDP0000119458 I 0.940
MDP0000193702 Malus domestica MDP0000193702 I 0.940
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.940
SPL13A Arabidopsis thaliana AT5G50570 I 0.938
SPL13A Arabidopsis thaliana AT5G50670 D 0.938
Bo3g024180 Brassica oleracea Bo3g024180 I 0.938
Bo9g097630 Brassica oleracea Bo9g097630 I 0.938
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.938
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.938
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.938
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.938
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.938
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.938
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.938
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.938
Bra022766 Brassica rapa Bra022766 I 0.937
29929.m004627 Ricinus communis 29929.m004627 I 0.937
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.937
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.937
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.937
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.936
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.936
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.936
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.936
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.935
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.935
SPL19 Oryza sativa OS11G0496600 I 0.935
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.935
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.935
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.935
Cla002666 Citrullus lanatus Cla002666 I 0.935
Pm024528 Prunus mume Pm024528 I 0.935
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.935
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.935
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.935
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.935
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.933
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.933
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.933
PK02140.1 Cannabis sativa PK02140.1 I 0.933
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.932
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.932
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.932
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.932
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.931
OS01G0922600 Oryza sativa OS01G0922600 I 0.931
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.931
MDP0000589558 Malus domestica MDP0000589558 I 0.930
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.930
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.929
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.929
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.929
Ca_01426 Cicer arietinum Ca_01426 I 0.929
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.928
Ca_24733 Cicer arietinum Ca_24733 I 0.928
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.928
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.927
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.927
Ca_05711 Cicer arietinum Ca_05711 I 0.927
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.927
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.926
Ca_24655 Cicer arietinum Ca_24655 I 0.926
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.925
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.924
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.924
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.923
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.922
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.922
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.921
OBART01G42150 Oryza barthii OBART01G42150 I 0.921
Cla019579 Citrullus lanatus Cla019579 I 0.921
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.921
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.921
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.920
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.919
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.919
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.919
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.918
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.918
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.918
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.918
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.917
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.915
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.915
SPL16 Oryza sativa OS08G0531600 I 0.915
SPL6 Arabidopsis thaliana AT1G69170 I 0.914
Bo6g031220 Brassica oleracea Bo6g031220 I 0.913
Bra039656 Brassica rapa Bra039656 I 0.913
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.913
Si001804m.g Setaria italica Si001804m.g I 0.913
Si013151m.g Setaria italica Si013151m.g I 0.913
Pm030597 Prunus mume Pm030597 I 0.913
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.913
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.913
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.913
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.913
Bo3g042890 Brassica oleracea Bo3g042890 I 0.912
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.912
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.912
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.912
OBART09G15750 Oryza barthii OBART09G15750 I 0.912
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.912
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.912
SPL18 Oryza sativa OS09G0507100 I 0.912
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.912
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.912
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.912
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.912
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.911
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.911
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.911
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.911
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.911
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.909
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.909
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.909
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.909
PK14243.1 Cannabis sativa PK14243.1 N 0.909
Cla001541 Citrullus lanatus Cla001541 I 0.908
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.908
GRMZM2G138421 Zea mays GRMZM2G138421 I 0.907
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.907
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.907
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.906
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.905
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.905
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.905
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.905
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.905
Cla004156 Citrullus lanatus Cla004156 I 0.904
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.904
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.904
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.904
SELMODRAFT_28597 Selaginella moellendorffii SELMODRAFT_28597 I 0.903
SELMODRAFT_79699 Selaginella moellendorffii SELMODRAFT_79699 I 0.903
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.903
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.903
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.903
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.903
MDP0000171877 Malus domestica MDP0000171877 I 0.901
MDP0000246046 Malus domestica MDP0000246046 I 0.901
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.900
F775_27970 Aegilops tauschii F775_27970 I 0.900
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.900
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.900
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.900
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.900
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.900
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.899
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.899
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.898
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.898
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.898
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.898
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.898
PK03565.1 Cannabis sativa PK03565.1 I 0.898
SPL15 Oryza indica BGIOSGA028994 I 0.896
OBART08G20320 Oryza barthii OBART08G20320 I 0.896
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.896
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.896
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.896
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.896
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.896
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.896
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.896
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.896
Cla020006 Citrullus lanatus Cla020006 I 0.896
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.896
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.896
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.896
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.895
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.895
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.895
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.895
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.895
Ca_00320 Cicer arietinum Ca_00320 I 0.895
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.895
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.895
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.894
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.893
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.893
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.892
Bo2g062840 Brassica oleracea Bo2g062840 I 0.891
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.891
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.891
Bra038324 Brassica rapa Bra038324 I 0.890
Pm007035 Prunus mume Pm007035 I 0.890
MDP0000156994 Malus domestica MDP0000156994 I 0.890
MDP0000861601 Malus domestica MDP0000861601 I 0.890
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.890
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.889
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.889
Pm002693 Prunus mume Pm002693 I 0.889
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.889
MDP0000297978 Malus domestica MDP0000297978 I 0.889
Bo6g120690 Brassica oleracea Bo6g120690 I 0.888
Bra004363 Brassica rapa Bra004363 N 0.888
Bra015732 Brassica rapa Bra015732 I 0.888
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.888
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.888
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.888
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.888
Bo6g108620 Brassica oleracea Bo6g108620 N 0.887
TCM_008150 Theobroma cacao TCM_008150 I 0.887
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.886