Thhalv10018638m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10018638m.g T323693_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.899 0.787
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.892 0.667
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.892 0.667
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.892 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018638m SBP 132 206

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.987
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.987
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.978
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.978
Pm030597 Prunus mume Pm030597 I 0.978
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.977
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.977
MDP0000171877 Malus domestica MDP0000171877 I 0.975
MDP0000246046 Malus domestica MDP0000246046 I 0.975
SPL6 Arabidopsis thaliana AT1G69170 I 0.974
Bra038324 Brassica rapa Bra038324 I 0.973
Bo2g062840 Brassica oleracea Bo2g062840 I 0.972
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.971
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.971
Ca_24655 Cicer arietinum Ca_24655 I 0.971
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.968
MDP0000589558 Malus domestica MDP0000589558 I 0.968
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.968
MDP0000119458 Malus domestica MDP0000119458 I 0.966
MDP0000193702 Malus domestica MDP0000193702 I 0.966
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.962
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.960
PK03565.1 Cannabis sativa PK03565.1 I 0.960
Bo6g108620 Brassica oleracea Bo6g108620 N 0.959
Bra004363 Brassica rapa Bra004363 N 0.959
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.959
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.959
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.958
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.957
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.957
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.954
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.954
Si032170m.g Setaria italica Si032170m.g I 0.954
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.954
Cla019331 Citrullus lanatus Cla019331 I 0.954
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.954
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.954
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.954
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.954
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.954
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.954
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.953
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.953
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.953
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.953
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.953
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.953
OBART07G15570 Oryza barthii OBART07G15570 I 0.953
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.953
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.953
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.953
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.953
TCM_014330 Theobroma cacao TCM_014330 I 0.953
Ca_19449 Cicer arietinum Ca_19449 I 0.953
30174.m009082 Ricinus communis 30174.m009082 I 0.953
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.953
30138.m003942 Ricinus communis 30138.m003942 I 0.952
MDP0000146640 Malus domestica MDP0000146640 I 0.952
MDP0000778465 Malus domestica MDP0000778465 I 0.952
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.951
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.950
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.950
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.950
TCM_011483 Theobroma cacao TCM_011483 I 0.950
Cla018827 Citrullus lanatus Cla018827 I 0.950
Pm025028 Prunus mume Pm025028 I 0.950
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.949
PK17790.1 Cannabis sativa PK17790.1 I 0.949
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.948
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.948
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.948
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.948
Cla021411 Citrullus lanatus Cla021411 I 0.945
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.945
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.944
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.944
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.944
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.944
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.944
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.940
F775_02791 Aegilops tauschii F775_02791 I 0.940
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.940
OB04G27960 Oryza brachyantha OB04G27960 I 0.940
OBART04G20940 Oryza barthii OBART04G20940 I 0.940
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.940
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.940
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.940
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.940
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.940
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.940
SPL7 Oryza sativa OS04G0551500 I 0.940
Si013151m.g Setaria italica Si013151m.g I 0.940
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.940
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.940
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.940
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.940
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.940
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.938
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.938
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.938
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.938
Si010262m.g Setaria italica Si010262m.g I 0.937
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.934
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.934
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.934
SPL19 Oryza sativa OS11G0496600 I 0.934
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.932
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.932
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.932
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.931
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.931
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.930
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.930
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.928
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.928
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.928
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.925
PK19500.1 Cannabis sativa PK19500.1 I 0.925
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.924
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.924
Ca_10879 Cicer arietinum Ca_10879 I 0.924
30174.m008805 Ricinus communis 30174.m008805 I 0.924
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.924
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.923
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.923
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.922
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.922
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.921
TCM_005620 Theobroma cacao TCM_005620 I 0.921
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.921
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.921
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.921
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.921
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.920
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.919
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.919
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.919
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.919
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.919
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.919
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.919
Cla017596 Citrullus lanatus Cla017596 I 0.919
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.919
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.919
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.919
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.919
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.919
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.918
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.918
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.918
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.918
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.917
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.917
Bo3g042890 Brassica oleracea Bo3g042890 I 0.916
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.916
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.916
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.915
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.915
Cla001541 Citrullus lanatus Cla001541 I 0.915
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.915
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.915
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.914
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.914
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.913
Si001804m.g Setaria italica Si001804m.g I 0.913
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.913
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.913
Bra021880 Brassica rapa Bra021880 I 0.912
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.912
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.912
Si026656m.g Setaria italica Si026656m.g I 0.912
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.912
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.912
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.911
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.909
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.908
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.908
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.908
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.908
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.908
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.908
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.907
Pm010075 Prunus mume Pm010075 I 0.907
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.905
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.905
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.904
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.904
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.904
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.904
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.904
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.904
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.904
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.903
Pm014154 Prunus mume Pm014154 I 0.903
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.903
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.902
OB09G21350 Oryza brachyantha OB09G21350 N 0.901
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I 0.901
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.900
F775_27970 Aegilops tauschii F775_27970 I 0.900
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.900
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.900
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.900
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.900
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.900
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.900
Pm002693 Prunus mume Pm002693 I 0.900
Pm007035 Prunus mume Pm007035 I 0.900
MDP0000297978 Malus domestica MDP0000297978 I 0.900
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.899
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.899
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.898
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.898
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.898
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.897
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.897
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.897
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.897
Cla009788 Citrullus lanatus Cla009788 I 0.896
SPL15 Oryza indica BGIOSGA028994 I 0.895
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.895
OBART08G20320 Oryza barthii OBART08G20320 I 0.895
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.895
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.895
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.895
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.895
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.895
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.895
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.895
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.895
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.895
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.895
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.894
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.894
MDP0000142582 Malus domestica MDP0000142582 N 0.893
SPL5 Arabidopsis thaliana AT3G15270 D 0.892
OPUNC07G14360 Oryza punctata OPUNC07G14360 N 0.892
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.892
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.892
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.892
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.892
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.892
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.891
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.891
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.891
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.891
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.888
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.888
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.888
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.888
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.888
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.888
Eucgr.K02545 Eucalyptus grandis Eucgr.K02545 I 0.887