MDP0000176265 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000176265 T323566_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.927 0.773
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.910 0.720
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.910 0.720
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.910 0.720
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.903 0.733
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.894 0.720
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.889 0.680
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.889 0.720
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.886 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000176265 SBP 41 115

Links

Other SBP family TFs
Other Malus domestica TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.966
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.957
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.956
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.956
Pm024528 Prunus mume Pm024528 I 0.956
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.956
Cla002666 Citrullus lanatus Cla002666 I 0.956
30147.m014478 Ricinus communis 30147.m014478 I 0.956
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.955
Pm007035 Prunus mume Pm007035 I 0.954
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.954
PK02140.1 Cannabis sativa PK02140.1 I 0.953
Ca_01426 Cicer arietinum Ca_01426 I 0.952
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.952
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.952
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.952
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.951
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.951
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.951
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.949
Ca_05711 Cicer arietinum Ca_05711 I 0.949
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.947
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.946
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.945
TCM_014668 Theobroma cacao TCM_014668 I 0.943
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.943
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.942
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.941
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.941
29929.m004627 Ricinus communis 29929.m004627 I 0.940
TCM_008671 Theobroma cacao TCM_008671 I 0.939
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.939
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.939
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.939
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.939
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.939
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.938
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.938
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.938
Cla001541 Citrullus lanatus Cla001541 I 0.937
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.937
PK19500.1 Cannabis sativa PK19500.1 I 0.937
Cla019579 Citrullus lanatus Cla019579 I 0.936
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.936
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.936
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.936
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.934
Pm016138 Prunus mume Pm016138 I 0.934
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.933
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.930
Bo9g097630 Brassica oleracea Bo9g097630 I 0.929
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.929
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.929
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.929
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.928
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.928
Bo3g024180 Brassica oleracea Bo3g024180 I 0.927
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.927
SPL13A Arabidopsis thaliana AT5G50670 D 0.927
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.927
SPL13A Arabidopsis thaliana AT5G50570 I 0.927
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.926
Bra022766 Brassica rapa Bra022766 I 0.925
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.925
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.923
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.923
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.922
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.921
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.921
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.921
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.920
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.920
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.920
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.919
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.919
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.919
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.919
F775_27970 Aegilops tauschii F775_27970 I 0.919
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.919
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.919
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.918
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.917
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.916
SPL15 Oryza indica BGIOSGA028994 I 0.916
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.916
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.916
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.916
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.916
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.916
OBART08G20320 Oryza barthii OBART08G20320 I 0.916
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.916
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.916
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.915
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.914
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.914
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.914
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.914
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.914
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.914
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.914
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I 0.912
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.911
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.911
SPL1 Arabidopsis thaliana AT2G47070 D 0.910
PK25661.1 Cannabis sativa PK25661.1 I 0.910
mgf001202m Mimulus guttatus mgf001202m I 0.910
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.910
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.910
30170.m014245 Ricinus communis 30170.m014245 I 0.910
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.909
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.909
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.908
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.908
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.908
MDP0000263766 Malus domestica MDP0000263766 I 0.906
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.906
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.906
MDP0000589558 Malus domestica MDP0000589558 I 0.905
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.905
Bo5g127310 Brassica oleracea Bo5g127310 I 0.905
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.905
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.905
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.905
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.905
Bra027265 Brassica rapa Bra027265 I 0.905
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.904
Pm017778 Prunus mume Pm017778 I 0.904
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.903
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.903
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.903
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.903
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.903
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.903
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.902
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.902
Ca_24655 Cicer arietinum Ca_24655 I 0.901
Pm002693 Prunus mume Pm002693 I 0.901
mgf003797m Mimulus guttatus mgf003797m I 0.901
28211.m000132 Ricinus communis 28211.m000132 I 0.901
MDP0000297978 Malus domestica MDP0000297978 I 0.901
mgf010913m Mimulus guttatus mgf010913m I 0.901
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.901
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.901
OS01G0922600 Oryza sativa OS01G0922600 I 0.899
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.899
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.899
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.899
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.898
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.897
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.897
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.897
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.897
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.897
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.897
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.897
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.896
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.896
TCM_031595 Theobroma cacao TCM_031595 I 0.896
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.895
PK17790.1 Cannabis sativa PK17790.1 I 0.894
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.894
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.894
mgf009459m Mimulus guttatus mgf009459m I 0.894
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.894
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.894
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.893
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.893
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.893
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.893
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.893
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.893
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.893
Si034095m.g Setaria italica Si034095m.g I 0.893
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.892
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.892
OB03G47050 Oryza brachyantha OB03G47050 I 0.892
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.892
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.892
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.892
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.892
SPL6 Oryza sativa OS03G0833300 I 0.892
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.892
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.892
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.892
OBART03G39900 Oryza barthii OBART03G39900 I 0.892
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.891
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.891
Si013151m.g Setaria italica Si013151m.g I 0.890
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.890
MDP0000262141 Malus domestica MDP0000262141 I 0.890
Bo3g042890 Brassica oleracea Bo3g042890 I 0.890
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.890
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.889
PK06791.1 Cannabis sativa PK06791.1 D 0.889
SPL12 Arabidopsis thaliana AT3G60030 D 0.889
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.889
Bo4g005730 Brassica oleracea Bo4g005730 I 0.889
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.889
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.889
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.889
Bra041037 Brassica rapa Bra041037 I 0.889
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.889
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.889
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.889
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.889
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.889
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.889
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.889
Ca_01036 Cicer arietinum Ca_01036 I 0.889
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.889
30076.m004574 Ricinus communis 30076.m004574 I 0.889
OBART01G42150 Oryza barthii OBART01G42150 I 0.889
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.889
Ca_03548 Cicer arietinum Ca_03548 I 0.889
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.889
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.889
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.889
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.889
TCM_004922 Theobroma cacao TCM_004922 I 0.889
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.889
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.888
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.888
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.888
F775_31139 Aegilops tauschii F775_31139 I 0.888
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.888
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.888
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.888
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.888
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.888
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.888
OB08G27190 Oryza brachyantha OB08G27190 I 0.888
Si026656m.g Setaria italica Si026656m.g I 0.887
Bo6g120690 Brassica oleracea Bo6g120690 I 0.887
MDP0000919693 Malus domestica MDP0000919693 I 0.887
29889.m003388 Ricinus communis 29889.m003388 I 0.887
Bra038101 Brassica rapa Bra038101 I 0.887
Bra015732 Brassica rapa Bra015732 I 0.887
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.887
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.887
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.887
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.886
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.886
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D 0.886
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.886
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.886
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.886
Pm022881 Prunus mume Pm022881 I 0.886
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.886
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.885
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.885