OBART05G27740 (Oryza barthii)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 OBART05G27740 T323892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART05G27740.1 Sigma 70 327 393

Links

Other Sigma 70 family TFs
Other Oryza barthii TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00407 Aquilegia coerulea Aquca_013_00407 N
fgenesh1_pg.C_scaffold_2000170 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000170 N
SCL28 Arabidopsis thaliana AT1G63100 N
Bostr.22157s0011 Boechera stricta Bostr.22157s0011 N
PK26305.1 Cannabis sativa PK26305.1 N
Cagra.9501s0015 Capsella grandiflora Cagra.9501s0015 N
Carubv10019945m.g Capsella rubella Carubv10019945m.g N
evm.TU.supercontig_74.80 Carica papaya evm.TU.supercontig_74.80 N
Ca_08738 Cicer arietinum Ca_08738 N
Cla004494 Citrullus lanatus Cla004494 N
Ciclev10019186m.g Citrus clementina Ciclev10019186m.g N
orange1.1g005954m.g Citrus sinensis orange1.1g005954m.g N
Cucsa.041620 Cucumis sativus Cucsa.041620 N
Eucgr.D01917 Eucalyptus grandis Eucgr.D01917 N
Thhalv10023324m.g Eutrema salsugineum Thhalv10023324m.g N
gene32389-v1.0-hybrid Fragaria vesca gene32389-v1.0-hybrid N
GLYMA17G14030 Glycine max GLYMA17G14030 N
GLYMA05G03490 Glycine max GLYMA05G03490 N
Gorai.008G243900 Gossypium raimondii Gorai.008G243900 N
Gorai.003G162400 Gossypium raimondii Gorai.003G162400 N
Lus10029592.g Linum usitatissimum Lus10029592.g N
Lus10006322.g Linum usitatissimum Lus10006322.g N
LjSGA_020116.2 Lotus japonicus LjSGA_020116.2 N
MDP0000243351 Malus domestica MDP0000243351 N
MDP0000915100 Malus domestica MDP0000915100 N
cassava2243.valid.m1 Manihot esculenta cassava2243.valid.m1 N
cassava41178.m1 Manihot esculenta cassava41178.m1 N
MTR_4g102790 Medicago truncatula MTR_4g102790 N
mgf018176m Mimulus guttatus mgf018176m N
POPTR_0003s12240 Populus trichocarpa POPTR_0003s12240 N
POPTR_0001s08850 Populus trichocarpa POPTR_0001s08850 N
Pm023754 Prunus mume Pm023754 N
30190.m011131 Ricinus communis 30190.m011131 N
SapurV1A.0507s0230 Salix purpurea SapurV1A.0507s0230 N
SapurV1A.1081s0090 Salix purpurea SapurV1A.1081s0090 N
Solyc08g080400.1 Solanum lycopersicum Solyc08g080400.1 N
PGSC0003DMG400003047 Solanum tuberosum PGSC0003DMG400003047 N
TCM_016186 Theobroma cacao TCM_016186 N
VIT_02s0025g04000 Vitis vinifera VIT_02s0025g04000 N