cNFI-A (Gallus gallus)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSGALG00000010924 T324650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.989 0.989
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.989 0.989
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.989 0.989
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.989 0.989
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.989 0.989
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.989 0.989
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.945 0.945
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.945 0.945
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.945 0.945
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.945 0.945
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.945 0.945
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.945 0.945
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.923 0.923
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.923 0.923
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.923 0.923
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.923 0.923
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.923 0.923
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.923 0.923
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.868 0.868
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.857 0.857
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.857 0.857
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.857 0.857
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.857 0.857
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.857 0.857
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.857 0.857
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.857 0.857
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.857 0.857
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000017747 SMAD 68 172
ENSGALP00000017752 SMAD 158 262
ENSGALP00000037223 SMAD 68 172

Links

Other SMAD family TFs
Other Gallus gallus TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_192433 Agaricus bisporus AGABI2DRAFT_192433 N
M378DRAFT_12738 Amanita muscaria M378DRAFT_12738 N
BOTBODRAFT_25870 Botryobasidium botryosum BOTBODRAFT_25870 I
BOTBODRAFT_56815 Botryobasidium botryosum BOTBODRAFT_56815 N
CC1G_01991 Coprinopsis cinerea CC1G_01991 N
L804_03528 Cryptococcus gattii L804_03528 I
CNG03450 Cryptococcus neoformans CNG03450 D
warA Dictyostelium discoideum DDB_G0291075 I
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I
FIBRA_03525 Fibroporia radiculosa FIBRA_03525 I
GALMADRAFT_540101 Galerina marginata GALMADRAFT_540101 N
GLOTRDRAFT_127900 Gloeophyllum trabeum GLOTRDRAFT_127900 I
M413DRAFT_24511 Hebeloma cylindrosporum M413DRAFT_24511 N
EuGene3000454 Heterobasidion annosum EuGene3000454 N
HETIRDRAFT_169178 Heterobasidion irregulare HETIRDRAFT_169178 N
HETIRDRAFT_431289 Heterobasidion irregulare HETIRDRAFT_431289 N
JAAARDRAFT_44019 Jaapia argillacea JAAARDRAFT_44019 N
K443DRAFT_82097 Laccaria amethystina K443DRAFT_82097 N
K443DRAFT_105165 Laccaria amethystina K443DRAFT_105165 I
LACBIDRAFT_324166 Laccaria bicolor LACBIDRAFT_324166 N
LACBIDRAFT_297628 Laccaria bicolor LACBIDRAFT_297628 N
Moror_6850 Moniliophthora roreri Moror_6850 N
fgeneshMC_pg.10_#_259 Mucor circinelloides fgeneshMC_pg.10_#_259 I
gw1.6.914.1 Mucor circinelloides gw1.6.914.1 I
gw1.10.371.1 Mucor circinelloides gw1.10.371.1 I
PAXRUDRAFT_823153 Paxillus rubicundulus PAXRUDRAFT_823153 N
PHACADRAFT_258345 Phanerochaete carnosa PHACADRAFT_258345 I
PHLGIDRAFT_184498 Phlebiopsis gigantea PHLGIDRAFT_184498 I
gw1.26.106.1 Phycomyces blakesleeanus gw1.26.106.1 I
gw1.16.189.1 Phycomyces blakesleeanus gw1.16.189.1 I
PILCRDRAFT_101484 Piloderma croceum PILCRDRAFT_101484 N
PISMIDRAFT_217828 Pisolithus microcarpus PISMIDRAFT_217828 N
PLEOSDRAFT_1112690 Pleurotus ostreatus PLEOSDRAFT_1112690 N
PLICRDRAFT_95251 Plicaturopsis crispa PLICRDRAFT_95251 N
EFA86584.1 Polysphondylium pallidum EFA86584.1 I
POSPLDRAFT_106191 Postia placenta POSPLDRAFT_106191 N
GLOINDRAFT_346743 Rhizophagus irregularis GLOINDRAFT_346743 I
RO3G_03673 Rhizopus oryzae RO3G_03673 I
RO3G_16317 Rhizopus oryzae RO3G_16317 I
RO3G_14851 Rhizopus oryzae RO3G_14851 I
RO3G_11070 Rhizopus oryzae RO3G_11070 N
RO3G_04480 Rhizopus oryzae RO3G_04480 I
RO3G_01863 Rhizopus oryzae RO3G_01863 I
SCHCODRAFT_257652 Schizophyllum commune SCHCODRAFT_257652 I
SPPG_06166 Spizellomyces punctatus SPPG_06166 I
SPPG_03931 Spizellomyces punctatus SPPG_03931 I
CY34DRAFT_611334 Suillus luteus CY34DRAFT_611334 N
BN946_scf184983.g13 Trametes cinnabarina BN946_scf184983.g13 I
fgeneshTM_pg.2_#_419 Tremella mesenterica fgeneshTM_pg.2_#_419 I
M407DRAFT_128179 Tulasnella calospora M407DRAFT_128179 N
J056_002014 Wallemia ichthyophaga J056_002014 N
WALSEDRAFT_62198 Wallemia sebi WALSEDRAFT_62198 N