CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RO3G_03673
(
Rhizopus oryzae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
RO3G_03673
T203760_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YHP1
M02191_2.00
Saccharomyces cerevisiae
NWWATKRNN
NNYMATWWN
PBM
Weirauch et al.(2014)
pTH6381
0.681
0.439
YHP1
M08423_2.00
Saccharomyces cerevisiae
TAATTG
CAATTA
ChIP-chip
Mathelier et al.(2014)
MA0426.1
0.681
0.439
YHP1
M08573_2.00
Saccharomyces cerevisiae
WNTAATTR
YAATTANW
Misc
DeBoer et al.(2011)
YDR451C_716
0.681
0.439
YHP1
M10797_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$YHP1_01
0.681
0.439
YOX1
M00058_2.00
Saccharomyces cerevisiae
HTWAATTR
YAATTWAD
PBM
Badis et al.(2008)
YOX1_2073
0.669
0.404
YOX1
M01552_2.00
Saccharomyces cerevisiae
BWWATDR
YHATWWV
PBM
Zhu et al.(2009)
Yox1
0.669
0.404
YOX1
M07487_2.00
Saccharomyces cerevisiae
YTAATTWN
NWAATTAR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0433.1
0.669
0.404
YOX1
M08575_2.00
Saccharomyces cerevisiae
YTAATTWN
NWAATTAR
Misc
DeBoer et al.(2011)
YML027W_498
0.669
0.404
yox1
M02174_2.00
Schizosaccharomyces pombe
NNHHATDDNN
NNHHATDDNN
PBM
Weirauch et al.(2014)
pTH6057
0.617
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RO3T_03672
Homeodomain
62
118
KAKRRRANGEQLEVLNRVFDRTFFPSTQVRAELGRQLGMSPRTVQIWFQNRRQAMRT
Links
Other
Homeodomain
family TFs
Other
Rhizopus oryzae
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgeneshMC_pg.10_#_259
Mucor circinelloides
fgeneshMC_pg.10_#_259
I
0.863
fgeneshPB_pg.5__518
Phycomyces blakesleeanus
fgeneshPB_pg.5__518
I
0.846
gw1.54.52.1
Phycomyces blakesleeanus
gw1.54.52.1
I
0.786
RO3G_16317
Rhizopus oryzae
RO3G_16317
I
0.724
gw1.4.1148.1
Mucor circinelloides
gw1.4.1148.1
I
0.713
M407DRAFT_21315
Tulasnella calospora
M407DRAFT_21315
I
0.708
ZBAI_09382
Zygosaccharomyces bailii
ZBAI_09382
I
0.696
ZBAI_03698
Zygosaccharomyces bailii
ZBAI_03698
I
0.696
SPPG_01917
Spizellomyces punctatus
SPPG_01917
I
0.696
PNEG_03146
Pneumocystis murina
PNEG_03146
I
0.695
PredSwiss_CON591.1
Pneumocystis carinii
PredSwiss_CON591.1
I
0.695
gw1.16.189.1
Phycomyces blakesleeanus
gw1.16.189.1
I
0.685
SKUD_123402
Saccharomyces kudriavzevii
SKUD_123402
I
0.681
5231_YDR451C
Saccharomyces mikatae
5231_YDR451C
I
0.681
YHP1
Saccharomyces cerevisiae
YDR451C
D
0.681
5532_YDR451C
Saccharomyces bayanus
5532_YDR451C
I
0.681
5594_YDR451C
Saccharomyces paradoxus
5594_YDR451C
I
0.681
Kpol_1004p50
Vanderwaltozyma polyspora
Kpol_1004p50
I
0.679
ZYRO0D13596g
Zygosaccharomyces rouxii
ZYRO0D13596g
I
0.679
TBLA_0D01390
Tetrapisispora blattae
TBLA_0D01390
I
0.678
JL09_g4323
Pichia kudriavzevii
JL09_g4323
I
0.674
BOTBODRAFT_25870
Botryobasidium botryosum
BOTBODRAFT_25870
I
0.674
CAGL0G07249g
Candida glabrata
CAGL0G07249g
I
0.671
KAFR_0C05600
Kazachstania africana
KAFR_0C05600
I
0.670
17440_YML027W
Saccharomyces paradoxus
17440_YML027W
I
0.669
YOX1
Saccharomyces cerevisiae
YML027W
D
0.669
TDEL_0A04320
Torulaspora delbrueckii
TDEL_0A04320
I
0.669
SU7_2475
Saccharomyces arboricola
SU7_2475
I
0.669
SU7_2763
Saccharomyces arboricola
SU7_2763
I
0.669
PGUG_00382
Meyerozyma guilliermondii
PGUG_00382
I
0.664
CPAG_00635
Candida parapsilosis
CPAG_00635
I
0.664
gw1.10.371.1
Mucor circinelloides
gw1.10.371.1
I
0.664
CORT_0H00310
Candida orthopsilosis
CORT_0H00310
I
0.664
PGUG_00382
Candida guilliermondii
PGUG_00382
I
0.664
TPHA_0D02630
Tetrapisispora phaffii
TPHA_0D02630
I
0.657
TPHA_0K00360
Tetrapisispora phaffii
TPHA_0K00360
I
0.655
PIIN_05295
Piriformospora indica
PIIN_05295
I
0.654
RO3G_04480
Rhizopus oryzae
RO3G_04480
I
0.654
YALI0_E15510g
Yarrowia lipolytica
YALI0_E15510g
I
0.649
RO3G_14851
Rhizopus oryzae
RO3G_14851
I
0.642
SCHCODRAFT_257652
Schizophyllum commune
SCHCODRAFT_257652
I
0.641
KUCA_T00000773001
Kuraishia capsulata
KUCA_T00000773001
I
0.634
RO3G_01863
Rhizopus oryzae
RO3G_01863
I
0.630
AGOS_AER314W
Ashbya gossypii
AGOS_AER314W
I
0.629
AACERI_AaceriAER314W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAER314W
I
0.629
Scas_Contig641.12
Saccharomyces castellii
Scas_Contig641.12
I
0.628
NCAS_0H02770
Naumovozyma castellii
NCAS_0H02770
I
0.628
Ecym_4103
Eremothecium cymbalariae
Ecym_4103
I
0.628
SPPG_04779
Spizellomyces punctatus
SPPG_04779
I
0.625
Kpol_1023p80
Vanderwaltozyma polyspora
Kpol_1023p80
I
0.624
G647_08323
Cladophialophora carrionii
G647_08323
I
0.621
HMPREF1120_01778
Exophiala dermatitidis
HMPREF1120_01778
I
0.621
A1O3_10315
Capronia epimyces
A1O3_10315
I
0.621
A1O7_09958
Cladophialophora yegresii
A1O7_09958
I
0.621
A1O1_06861
Capronia coronata
A1O1_06861
I
0.621
Z518_06261
Rhinocladiella mackenziei
Z518_06261
I
0.621
RO3G_11070
Rhizopus oryzae
RO3G_11070
N
0.618
BN7_6497
Wickerhamomyces ciferrii
BN7_6497
I
0.618
SPOG_04875
Schizosaccharomyces cryophilus
SPOG_04875
I
0.617
SOCG_04925
Schizosaccharomyces octosporus
SOCG_04925
I
0.617
yox1
Schizosaccharomyces pombe
SPBC21B10.13c
D
0.617
PAS_chr2-1_0784
Komagataella pastoris
PAS_chr2-1_0784
I
0.616
XP_002491722.1
Pichia pastoris
XP_002491722.1
I
0.616
NDAI_0C00850
Naumovozyma dairenensis
NDAI_0C00850
I
0.616
LALA0_S09e00364g
Lachancea lanzarotensis
LALA0_S09e00364g
I
0.616
GNLVRS01_PISO0M03048g
Millerozyma farinosa
GNLVRS01_PISO0M03048g
I
0.614
GNLVRS01_PISO0N03203g
Millerozyma farinosa
GNLVRS01_PISO0N03203g
I
0.614
Z517_12283
Fonsecaea pedrosoi
Z517_12283
I
0.613
gw1.6.914.1
Mucor circinelloides
gw1.6.914.1
I
0.613
GLOINDRAFT_346743
Rhizophagus irregularis
GLOINDRAFT_346743
I
0.613
KLTH0G04686g
Kluyveromyces thermotolerans
KLTH0G04686g
I
0.612
SAKL0G05896g
Lachancea kluyveri
SAKL0G05896g
I
0.612
Kwal_18450
Kluyveromyces waltii
Kwal_18450
I
0.612
KLTH0G04686g
Lachancea thermotolerans
KLTH0G04686g
I
0.612
TBLA_0E02960
Tetrapisispora blattae
TBLA_0E02960
I
0.612
KNAG_0B03460
Kazachstania naganishii
KNAG_0B03460
I
0.612
SJAG_01157
Schizosaccharomyces japonicus
SJAG_01157
I
0.611
PHLGIDRAFT_184498
Phlebiopsis gigantea
PHLGIDRAFT_184498
I
0.610
BN946_scf184983.g13
Trametes cinnabarina
BN946_scf184983.g13
I
0.610
PHACADRAFT_258345
Phanerochaete carnosa
PHACADRAFT_258345
I
0.610
PV04_10601
Capronia semiimmersa
PV04_10601
I
0.609
A1O5_07631
Cladophialophora psammophila
A1O5_07631
I
0.609
SPPG_03931
Spizellomyces punctatus
SPPG_03931
I
0.609
Z519_06193
Cladophialophora bantiana
Z519_06193
I
0.609
FIBRA_03525
Fibroporia radiculosa
FIBRA_03525
I
0.608
GLOTRDRAFT_127900
Gloeophyllum trabeum
GLOTRDRAFT_127900
I
0.608
FOMPIDRAFT_1031831
Fomitopsis pinicola
FOMPIDRAFT_1031831
I
0.608
G210_2310
Candida maltosa
G210_2310
I
0.607
SPAPADRAFT_57590
Spathaspora passalidarum
SPAPADRAFT_57590
I
0.607
LELG_05443
Lodderomyces elongisporus
LELG_05443
I
0.607
HPODL_02118
Ogataea parapolymorpha
HPODL_02118
I
0.607
PICST_65833
Scheffersomyces stipitis
PICST_65833
I
0.607
CLUG_04271
Candida lusitaniae
CLUG_04271
I
0.607
CANTEDRAFT_113041
Candida tenuis
CANTEDRAFT_113041
I
0.607
DEHA2F22286g
Debaryomyces hansenii
DEHA2F22286g
I
0.607
CD36_70900
Candida dubliniensis
CD36_70900
I
0.607
CaO19.7017
Candida albicans
CaO19.7017
I
0.607
CTRG_04888
Candida tropicalis
CTRG_04888
I
0.607
estExt_fgenesh1_pm.C_chr_5.10316
Pichia stipitis
estExt_fgenesh1_pm.C_chr_5.10316
I
0.607
CLUG_04271
Clavispora lusitaniae
CLUG_04271
I
0.607
MVLG_02993
Microbotryum violaceum
MVLG_02993
I
0.604
SCHCODRAFT_238623
Schizophyllum commune
SCHCODRAFT_238623
I
0.602