SNAPOd2T00013695001 (Oikopleura dioica)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 SNAPOd2T00013695001 T325420_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMAD1
M11286_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_01 		0.733 0.733
SMAD1
M11287_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD1_Q6 		0.733 0.733
Smad5
M11288_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_01 		0.733 0.733
Smad5
M11292_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD5_03 		0.733 0.733
SMAD9
M11274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_01 		0.733 0.733
Smad9
M11290_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_02 		0.733 0.733
Smad9
M11289_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD8_03 		0.733 0.733
Mad
M06446_2.00 		Drosophila melanogaster
GYGHCGBCVS
SBGVCGDCRC		 B1H
Zhu et al.(2011)
Mad_FlyReg_FBgn0011648 		0.720 0.720
Mad
M08427_2.00 		Drosophila melanogaster
SNGRCGMSRVSRBNS
SNVYSBYSKCGYCNS		 ChIP-chip
Mathelier et al.(2014)
MA0535.1 		0.720 0.720
Mad
M09692_2.00 		Drosophila melanogaster
KCBGSHGKCGCSNC
GNSGCGMCDSCVGM		 Misc
Kulakovskiy et al.(2009)
Mad 		0.720 0.720
Mad
M11293_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$MAD_Q6 		0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00013695001 SMAD 8 96

Links

Other SMAD family TFs
Other Oikopleura dioica TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04018 Aegilops tauschii F775_04018 I
Aquca_002_00586 Aquilegia coerulea Aquca_002_00586 I
Aquca_006_00295 Aquilegia coerulea Aquca_006_00295 I
FEZ Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002274 I
FEZ Arabidopsis thaliana AT1G26870 I
Bostr.12659s0312 Boechera stricta Bostr.12659s0312 I
BRADI3G59380 Brachypodium distachyon BRADI3G59380 I
BRADI4G30177 Brachypodium distachyon BRADI4G30177 I
Bo5g045190 Brassica oleracea Bo5g045190 I
Bo6g109250 Brassica oleracea Bo6g109250 I
Bo8g076410 Brassica oleracea Bo8g076410 I
Bra004403 Brassica rapa Bra004403 I
Bra016294 Brassica rapa Bra016294 I
Bra024677 Brassica rapa Bra024677 I
Cagra.1150s0013 Capsella grandiflora Cagra.1150s0013 I
Carubv10011253m.g Capsella rubella Carubv10011253m.g I
evm.TU.supercontig_128.20 Carica papaya evm.TU.supercontig_128.20 I
Ca_18749 Cicer arietinum Ca_18749 I
Ca_26322 Cicer arietinum Ca_26322 I
Ciclev10011891m.g Citrus clementina Ciclev10011891m.g I
Ciclev10031623m.g Citrus clementina Ciclev10031623m.g I
orange1.1g015827m.g Citrus sinensis orange1.1g015827m.g I
orange1.1g047852m.g Citrus sinensis orange1.1g047852m.g I
Eucgr.G02506 Eucalyptus grandis Eucgr.G02506 I
Eucgr.I01940 Eucalyptus grandis Eucgr.I01940 I
Thhalv10007709m.g Eutrema salsugineum Thhalv10007709m.g I
Thhalv10019631m.g Eutrema salsugineum Thhalv10019631m.g I
gene03833-v1.0-hybrid Fragaria vesca gene03833-v1.0-hybrid I
GLYMA01G05680 Glycine max GLYMA01G05680 I
GLYMA02G11900 Glycine max GLYMA02G11900 I
GLYMA08G41260 Glycine max GLYMA08G41260 I
GLYMA13G05350 Glycine max GLYMA13G05350 I
GLYMA18G15020 Glycine max GLYMA18G15020 I
GLYMA19G02580 Glycine max GLYMA19G02580 I
Gorai.005G141200 Gossypium raimondii Gorai.005G141200 I
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I
Gorai.013G085000 Gossypium raimondii Gorai.013G085000 I
LPERR02G26510 Leersia perrieri LPERR02G26510 I
LPERR08G13170 Leersia perrieri LPERR08G13170 I
Lus10007263.g Linum usitatissimum Lus10007263.g I
Lus10015367.g Linum usitatissimum Lus10015367.g I
Lus10036749.g Linum usitatissimum Lus10036749.g I
Lus10037178.g Linum usitatissimum Lus10037178.g I
CM1835.10.nc Lotus japonicus CM1835.10.nc I
LjT46I09.50.nd Lotus japonicus LjT46I09.50.nd I
cassava38350.m1 Manihot esculenta cassava38350.m1 I
cassava39074.m1 Manihot esculenta cassava39074.m1 I
cassava45330.m1 Manihot esculenta cassava45330.m1 I
MTR_5g040420 Medicago truncatula MTR_5g040420 I
MTR_6g011860 Medicago truncatula MTR_6g011860 I
mgf025649m Mimulus guttatus mgf025649m I
GSMUA_Achr6G02680_001 Musa acuminata GSMUA_Achr6G02680_001 I
OBART02G32360 Oryza barthii OBART02G32360 I
OBART08G15880 Oryza barthii OBART08G15880 I
OB02G39340 Oryza brachyantha OB02G39340 I
OB08G23420 Oryza brachyantha OB08G23420 I
ORGLA02G0278900 Oryza glaberrima ORGLA02G0278900 I
OGLUM02G33000 Oryza glumaepatula OGLUM02G33000 I
OGLUM08G16650 Oryza glumaepatula OGLUM08G16650 I
BGIOSGA009044 Oryza indica BGIOSGA009044 I
BGIOSGA028728 Oryza indica BGIOSGA028728 I
OLONG_016322 Oryza longistaminata OLONG_016322 I
OMERI02G31030 Oryza meridionalis OMERI02G31030 I
OMERI08G13180 Oryza meridionalis OMERI08G13180 I
ONIVA06G04660 Oryza nivara ONIVA06G04660 I
ONIVA08G17120 Oryza nivara ONIVA08G17120 I
OPUNC02G29910 Oryza punctata OPUNC02G29910 I
OPUNC08G13940 Oryza punctata OPUNC08G13940 I
ORUFI02G34050 Oryza rufipogon ORUFI02G34050 I
ORUFI08G17800 Oryza rufipogon ORUFI08G17800 I
OS02G0745250 Oryza sativa OS02G0745250 I
OS08G0436700 Oryza sativa OS08G0436700 I
Pavir.Aa00706 Panicum virgatum Pavir.Aa00706 I
Pavir.Ab02998 Panicum virgatum Pavir.Ab02998 I
Pavir.Bb02181 Panicum virgatum Pavir.Bb02181 I
Pavir.Fa00893 Panicum virgatum Pavir.Fa00893 I
Pavir.J08304 Panicum virgatum Pavir.J08304 I
Pm015876 Prunus mume Pm015876 I
29032.m000021 Ricinus communis 29032.m000021 I
29813.m001479 Ricinus communis 29813.m001479 I
SapurV1A.0552s0060 Salix purpurea SapurV1A.0552s0060 I
SELMODRAFT_25673 Selaginella moellendorffii SELMODRAFT_25673 N
Si015514m.g Setaria italica Si015514m.g I
Si019308m.g Setaria italica Si019308m.g I
Si032144m.g Setaria italica Si032144m.g I
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I
Sb04g028015 Sorghum bicolor Sb04g028015 I
TCM_018508 Theobroma cacao TCM_018508 I
Traes_5AL_F35B9FF8E Triticum aestivum Traes_5AL_F35B9FF8E I
Traes_5BL_38DFDFE41 Triticum aestivum Traes_5BL_38DFDFE41 I
Traes_5DL_0713E8429 Triticum aestivum Traes_5DL_0713E8429 I
Traes_6AL_0D7866801 Triticum aestivum Traes_6AL_0D7866801 I
Traes_6BL_A169A3ECB Triticum aestivum Traes_6BL_A169A3ECB I
Traes_6DL_DA233B945 Triticum aestivum Traes_6DL_DA233B945 I
TRIUR3_01901 Triticum urartu TRIUR3_01901 I
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I
anac094 Vitis vinifera VIT_14s0108g00860 I
AC198937.4_FG005 Zea mays AC198937.4_FG005 I
GRMZM2G100593 Zea mays GRMZM2G100593 I
GRMZM2G152543 Zea mays GRMZM2G152543 I