ACEP13490 (Atta cephalotes)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ACEP13490 T326285_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.579 0.631
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.469 0.585
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.469 0.585
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.436 0.569
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACEP13490-PA Sox 1 65

Links

Other Sox family TFs
Other Atta cephalotes TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP17003 Atta cephalotes ACEP17003 N 0.000
BGIBMGA011184 Bombyx mori BGIBMGA011184 N 0.000
Cflo_06221--XP_392763.2_APIME Camponotus floridanus Cflo_06221--XP_392763.2_APIME N 0.000
CapteG128587 Capitella teleta CapteG128587 N 0.000
CLEC008450 Cimex lectularius CLEC008450 N 0.000
CGI_10027966 Crassostrea gigas CGI_10027966 N 0.000
CpipJ_CPIJ016883 Culex pipiens CpipJ_CPIJ016883 N 0.000
CPIJ016883 Culex quinquefasciatus CPIJ016883 N 0.000
DAPPUDRAFT_236433 Daphnia pulex DAPPUDRAFT_236433 N 0.000
Hsal_08739--XP_392763.2_APIME Harpegnathos saltator Hsal_08739--XP_392763.2_APIME N 0.000
HMEL014563 Heliconius melpomene HMEL014563 N 0.000
ISCW008318 Ixodes scapularis ISCW008318 N 0.000
LLOJ007360 Lutzomyia longipalpis LLOJ007360 N 0.000
MESCA011128 Megaselia scalaris MESCA011128 N 0.000
NV11063 Nasonia vitripennis NV11063 N 0.000
NV16860 Nasonia vitripennis NV16860 N 0.000
Ocbimv22010533m.g Octopus bimaculoides Ocbimv22010533m.g N 0.000
PPAI008460 Phlebotomus papatasi PPAI008460 N 0.000
RPRC003655 Rhodnius prolixus RPRC003655 N 0.000
SMAR009610 Strigamia maritima SMAR009610 N 0.000
SPU_000793 Strongylocentrotus purpuratus SPU_000793 N 0.000
L798_00141 Zootermopsis nevadensis L798_00141 N 0.000