CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SOX12
(
Sus scrofa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSSSCG00000021920
T329146_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox12
M00205_2.00
Mus musculus
HWTTGTBNNN
NNNVACAAWD
PBM
Badis et al.(2009)
Sox12_3957
0.439
0.895
SOX12
M05789_2.00
Homo sapiens
NATTGTTCGGK
MCCGAACAATN
SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX
0.439
0.895
SOX12
M05790_2.00
Homo sapiens
YATTGTTCBKT
AMVGAACAATR
SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX
0.439
0.895
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000024477
Sox
40
77
IKRPMNAFMVWSQHERRKIMEQWPDMHNAEISKRLAAA
Links
Other
Sox
family TFs
Other
Sus scrofa
TFs
195 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy