GLYMA13G05140 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA13G05140 T330289_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.429 0.537
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.429 0.537
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.422 0.507
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.422 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G05140.2 Sox 466 532

Links

Other Sox family TFs
Other Glycine max TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I 0.000
MBD3 Cavia porcellus ENSCPOG00000026210 N 0.000
Cmyd_10006703 Chelonia mydas Cmyd_10006703 N 0.000
ENSCHOG00000012250 Choloepus hoffmanni ENSCHOG00000012250 N 0.000
Mbd3 Dipodomys ordii ENSDORG00000004743 N 0.000
MBD3 Gorilla gorilla ENSGGOG00000012396 N 0.000
MBD3 Homo sapiens ENSG00000071655 N 0.000
MBD2 Homo sapiens ENSG00000134046 D 0.000
ENSSTOG00000015870 Ictidomys tridecemlineatus ENSSTOG00000015870 N 0.000
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.000
MBD3 Macaca mulatta ENSMMUG00000009014 N 0.000
Mbd2 Mus musculus ENSMUSG00000024513 D 0.000
ENSNLEG00000001734 Nomascus leucogenys ENSNLEG00000001734 N 0.000
ENSOPRG00000007642 Ochotona princeps ENSOPRG00000007642 N 0.000
Ogr00377 Ophisaurus gracilis Ogr00377 N 0.000
MBD3 Oryzias latipes ENSORLG00000004850 N 0.000
MBD3 Otolemur garnettii ENSOGAG00000024563 N 0.000
MBD3 Pan troglodytes ENSPTRG00000010209 N 0.000
ENSPANG00000015324 Papio anubis ENSPANG00000015324 N 0.000
MBD3 Procavia capensis ENSPCAG00000006257 N 0.000
MBD2 Pteropus vampyrus ENSPVAG00000008555 N 0.000
MBD2 Tursiops truncatus ENSTTRG00000009635 N 0.000