JAAARDRAFT_209433 (Jaapia argillacea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 JAAARDRAFT_209433 T330713_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.435 0.362
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.435 0.362
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.426 0.435
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.426 0.435
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.426 0.435
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.426 0.435
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.426 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KDQ54316 Sox 119 201

Links

Other Sox family TFs
Other Jaapia argillacea TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00018p00250840 Amborella trichopoda AMTR_s00018p00250840 N
AMTR_s00040p00189460 Amborella trichopoda AMTR_s00040p00189460 I
AMTR_s00065p00092420 Amborella trichopoda AMTR_s00065p00092420 N
Aquca_006_00049 Aquilegia coerulea Aquca_006_00049 N
Aquca_027_00414 Aquilegia coerulea Aquca_027_00414 N
Aquca_037_00140 Aquilegia coerulea Aquca_037_00140 N
Aquca_076_00011 Aquilegia coerulea Aquca_076_00011 N
Aquca_122_00004 Aquilegia coerulea Aquca_122_00004 N
AtGRF4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001379 N
AtGRF3 Arabidopsis lyrata fgenesh2_kg.4__1676__AT2G36400.1 N
GRF3 Arabidopsis thaliana AT2G36400 N
GRF4 Arabidopsis thaliana AT3G52910 N
Bostr.13129s0083 Boechera stricta Bostr.13129s0083 N
Bostr.23794s0452 Boechera stricta Bostr.23794s0452 N
BRADI3G51685 Brachypodium distachyon BRADI3G51685 N
Bo4g186220 Brassica oleracea Bo4g186220 N
Bra005268 Brassica rapa Bra005268 N
Bra006956 Brassica rapa Bra006956 N
Bra017240 Brassica rapa Bra017240 N
Bra019640 Brassica rapa Bra019640 N
Bra023066 Brassica rapa Bra023066 N
PK16254.1 Cannabis sativa PK16254.1 N
PK18842.1 Cannabis sativa PK18842.1 N
Cagra.0228s0030 Capsella grandiflora Cagra.0228s0030 N
Cagra.0612s0011 Capsella grandiflora Cagra.0612s0011 N
Carubv10017366m.g Capsella rubella Carubv10017366m.g N
Carubv10025172m.g Capsella rubella Carubv10025172m.g N
evm.TU.supercontig_3.145 Carica papaya evm.TU.supercontig_3.145 N
evm.TU.supercontig_5.63 Carica papaya evm.TU.supercontig_5.63 N
Ca_00772 Cicer arietinum Ca_00772 N
Ca_04035 Cicer arietinum Ca_04035 N
Ca_09216 Cicer arietinum Ca_09216 N
Cla017990 Citrullus lanatus Cla017990 N
Cla022992 Citrullus lanatus Cla022992 N
Ciclev10011856m.g Citrus clementina Ciclev10011856m.g N
Ciclev10019828m.g Citrus clementina Ciclev10019828m.g N
orange1.1g010979m.g Citrus sinensis orange1.1g010979m.g N
Cucsa.378420 Cucumis sativus Cucsa.378420 N
Cucsa.395430 Cucumis sativus Cucsa.395430 N
Eucgr.A01534 Eucalyptus grandis Eucgr.A01534 N
Eucgr.F00097 Eucalyptus grandis Eucgr.F00097 N
Thhalv10016778m.g Eutrema salsugineum Thhalv10016778m.g N
GLYMA03G35010 Glycine max GLYMA03G35010 N
GLYMA04G40880 Glycine max GLYMA04G40880 N
GLYMA06G13960 Glycine max GLYMA06G13960 N
GLYMA10G07790 Glycine max GLYMA10G07790 N
GLYMA13G21625 Glycine max GLYMA13G21625 N
GLYMA14G10090 Glycine max GLYMA14G10090 N
GLYMA14G10100 Glycine max GLYMA14G10100 N
GLYMA17G35090 Glycine max GLYMA17G35090 N
GLYMA17G35100 Glycine max GLYMA17G35100 N
GLYMA19G37740 Glycine max GLYMA19G37740 N
Gorai.005G098700 Gossypium raimondii Gorai.005G098700 N
Gorai.009G222200 Gossypium raimondii Gorai.009G222200 N
Gorai.009G277500 Gossypium raimondii Gorai.009G277500 N
Gorai.009G406500 Gossypium raimondii Gorai.009G406500 N
Gorai.010G027700 Gossypium raimondii Gorai.010G027700 N
MLOC_80060 Hordeum vulgare MLOC_80060 N
LPERR02G22680 Leersia perrieri LPERR02G22680 N
LjSGA_011435.1 Lotus japonicus LjSGA_011435.1 N
LjSGA_054039.1 Lotus japonicus LjSGA_054039.1 N
MDP0000214734 Malus domestica MDP0000214734 N
MDP0000808163 Malus domestica MDP0000808163 N
cassava22415.valid.m1 Manihot esculenta cassava22415.valid.m1 N
cassava32870.m1 Manihot esculenta cassava32870.m1 N
cassava37892.valid.m1 Manihot esculenta cassava37892.valid.m1 N
MTR_1g017490 Medicago truncatula MTR_1g017490 N
MTR_7g104050 Medicago truncatula MTR_7g104050 N
mgf001554m Mimulus guttatus mgf001554m N
mgf002023m Mimulus guttatus mgf002023m I
mgf026507m Mimulus guttatus mgf026507m I
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I
GSMUA_Achr3G22790_001 Musa acuminata GSMUA_Achr3G22790_001 N
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I
GSMUA_Achr8G07650_001 Musa acuminata GSMUA_Achr8G07650_001 N
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N
OBART02G27850 Oryza barthii OBART02G27850 N
OBART04G22410 Oryza barthii OBART04G22410 N
OB03G39940 Oryza brachyantha OB03G39940 I
OB04G29390 Oryza brachyantha OB04G29390 N
ORGLA02G0239200 Oryza glaberrima ORGLA02G0239200 N
ORGLA04G0194300 Oryza glaberrima ORGLA04G0194300 N
OGLUM02G28430 Oryza glumaepatula OGLUM02G28430 N
OGLUM04G22390 Oryza glumaepatula OGLUM04G22390 N
BGIOSGA008811 Oryza indica BGIOSGA008811 N
BGIOSGA016961 Oryza indica BGIOSGA016961 N
OLONG_025493 Oryza longistaminata OLONG_025493 N
OMERI02G27040 Oryza meridionalis OMERI02G27040 N
ONIVA02G30970 Oryza nivara ONIVA02G30970 N
ONIVA04G21020 Oryza nivara ONIVA04G21020 N
OPUNC02G25570 Oryza punctata OPUNC02G25570 N
OPUNC04G20120 Oryza punctata OPUNC04G20120 N
ORUFI02G29340 Oryza rufipogon ORUFI02G29340 N
ORUFI04G24060 Oryza rufipogon ORUFI04G24060 N
GRF10 Oryza sativa OS02G0678800 N
GRF12 Oryza sativa OS04G0574500 N
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I
Pavir.J06517 Panicum virgatum Pavir.J06517 N
gw1.246.118.1 Physcomitrella patens gw1.246.118.1 N
gw1.344.18.1 Physcomitrella patens gw1.344.18.1 N
POPTR_0002s11590 Populus trichocarpa POPTR_0002s11590 N
POPTR_0006s11630 Populus trichocarpa POPTR_0006s11630 N
POPTR_0012s02950 Populus trichocarpa POPTR_0012s02950 N
POPTR_0014s01320 Populus trichocarpa POPTR_0014s01320 N
Pm026217 Prunus mume Pm026217 N
PRUPE_ppa006912mg Prunus persica PRUPE_ppa006912mg N
27496.m000094 Ricinus communis 27496.m000094 N
SapurV1A.0208s0190 Salix purpurea SapurV1A.0208s0190 N
SapurV1A.0260s0250 Salix purpurea SapurV1A.0260s0250 I
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N
SapurV1A.0755s0030 Salix purpurea SapurV1A.0755s0030 N
Si018252m.g Setaria italica Si018252m.g N
Solyc04g077510.2 Solanum lycopersicum Solyc04g077510.2 N
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I
Solyc09g009200.1 Solanum lycopersicum Solyc09g009200.1 N
Solyc10g083510.1 Solanum lycopersicum Solyc10g083510.1 N
PGSC0003DMG400004942 Solanum tuberosum PGSC0003DMG400004942 N
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I
PGSC0003DMG400028259 Solanum tuberosum PGSC0003DMG400028259 N
Sb04g031890 Sorghum bicolor Sb04g031890 N
TCM_022490 Theobroma cacao TCM_022490 N
TCM_034655 Theobroma cacao TCM_034655 N
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N
AtGRF7 Vitis vinifera VIT_16s0098g01080 N
VIT_18s0001g08650 Vitis vinifera VIT_18s0001g08650 N
GRMZM2G045977 Zea mays GRMZM2G045977 N
GRMZM2G067743 Zea mays GRMZM2G067743 I
GRMZM2G124566 Zea mays GRMZM2G124566 N
GRMZM5G893117 Zea mays GRMZM5G893117 I