CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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KNAG_0A04840
(
Kazachstania naganishii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
KNAG_0A04840
T330803_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMO1
M11344_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$_HMO1_01
0.669
0.884
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCK68154
Sox
104
177
PKKPLTVFFAYSAYVRQELRDARQKAGLAPLSSTEITQEISKKWKELSDAEKEKWKQAYHVELEHYQKAKQEYL
Links
Other
Sox
family TFs
Other
Kazachstania naganishii
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ea03512
Panicum virgatum
Pavir.Ea03512
N
Pavir.J31927
Panicum virgatum
Pavir.J31927
N
Si000062m.g
Setaria italica
Si000062m.g
N