PRUPE_ppa004611mg (Prunus persica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PRUPE_ppa004611mg T332195_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.515 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.515 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMJ11132 Sox 175 243
EMJ11132 Sox 291 357
EMJ11132 Sox 419 487

Links

Other Sox family TFs
Other Prunus persica TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G36180 Brachypodium distachyon BRADI1G36180 N 0.000
MLOC_76302 Hordeum vulgare MLOC_76302 N 0.000
LPERR06G17370 Leersia perrieri LPERR06G17370 N 0.000
ORGLA06G0172100 Oryza glaberrima ORGLA06G0172100 N 0.000
OGLUM06G21860 Oryza glumaepatula OGLUM06G21860 N 0.000
OMERI06G21310 Oryza meridionalis OMERI06G21310 N 0.000
ONIVA06G24530 Oryza nivara ONIVA06G24530 N 0.000
OPUNC06G18940 Oryza punctata OPUNC06G18940 N 0.000
ORUFI06G22200 Oryza rufipogon ORUFI06G22200 N 0.000
Pavir.Da00564 Panicum virgatum Pavir.Da00564 N 0.000
Si008068m.g Setaria italica Si008068m.g N 0.000
Sb10g023950 Sorghum bicolor Sb10g023950 N 0.000
Traes_7DL_44FCA17C4 Triticum aestivum Traes_7DL_44FCA17C4 N 0.000
GRMZM2G114680 Zea mays GRMZM2G114680 N 0.000