SELMODRAFT_75453 (Selaginella moellendorffii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SELMODRAFT_75453 T332504_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.418 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ38183 Sox 36 105

Links

Other Sox family TFs
Other Selaginella moellendorffii TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N
FIT Arabidopsis thaliana AT2G28160 N
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N
Bo3g040310 Brassica oleracea Bo3g040310 N
Bo4g071850 Brassica oleracea Bo4g071850 N
Bo4g165090 Brassica oleracea Bo4g165090 N
Bra000495 Brassica rapa Bra000495 N
Bra011972 Brassica rapa Bra011972 N
Bra034392 Brassica rapa Bra034392 N
PK26582.1 Cannabis sativa PK26582.1 N
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N
Carubv10023654m.g Capsella rubella Carubv10023654m.g N
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N
Ca_17453 Cicer arietinum Ca_17453 N
Cla008847 Citrullus lanatus Cla008847 N
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N
Cucsa.385700 Cucumis sativus Cucsa.385700 N
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N
GLYMA12G08640 Glycine max GLYMA12G08640 N
GLYMA11G19850 Glycine max GLYMA11G19850 N
GLYMA13G39650 Glycine max GLYMA13G39650 N
GLYMA12G30240 Glycine max GLYMA12G30240 N
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N
MLOC_6707 Hordeum vulgare MLOC_6707 N
LPERR04G07210 Leersia perrieri LPERR04G07210 N
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N
cassava28523.m1 Manihot esculenta cassava28523.m1 N
MTR_2g084280 Medicago truncatula MTR_2g084280 N
mgf025442m Mimulus guttatus mgf025442m N
mgf022253m Mimulus guttatus mgf022253m N
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N
OBART04G10120 Oryza barthii OBART04G10120 N
OB04G17410 Oryza brachyantha OB04G17410 N
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N
OLONG_016577 Oryza longistaminata OLONG_016577 N
ONIVA04G07960 Oryza nivara ONIVA04G07960 N
OPUNC04G08160 Oryza punctata OPUNC04G08160 N
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N
OS04G0381700 Oryza sativa OS04G0381700 N
Pavir.J29678 Panicum virgatum Pavir.J29678 N
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N
Pavir.J28741 Panicum virgatum Pavir.J28741 N
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N
FIT1 Populus trichocarpa POPTR_0009s01100 N
Pm001154 Prunus mume Pm001154 N
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N
Si010533m.g Setaria italica Si010533m.g N
Si010468m.g Setaria italica Si010468m.g N
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N
Sb06g012030 Sorghum bicolor Sb06g012030 N
TCM_041590 Theobroma cacao TCM_041590 N
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N
FIT1 Vitis vinifera VIT_06s0061g00720 N
GRMZM2G173521 Zea mays GRMZM2G173521 N
GRMZM2G107672 Zea mays GRMZM2G107672 N