Ca_05811 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_05811 T333590_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.445 0.665
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.445 0.665
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_05811 Sox 139 205
Ca_05811 Sox 255 321
Ca_05811 Sox 384 452

Links

Other Sox family TFs
Other Cicer arietinum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.433
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.474
HMGB13 Arabidopsis thaliana AT4G11080 D 0.445
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.441
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.423
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.421
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.420
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.446
Cla011101 Citrullus lanatus Cla011101 I 0.420
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.430
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.425
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.434
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.448
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.444
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.437
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.491
MDP0000268093 Malus domestica MDP0000268093 I 0.426
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.543
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.447
Pm024077 Prunus mume Pm024077 I 0.424
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.424
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.435
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.428