29631.m001046 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 29631.m001046 T333887_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.552 0.554
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.514 0.492
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.485 0.400
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.485 0.400
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.485 0.492
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.485 0.492
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29631.m001046 Sox 124 202

Links

Other Sox family TFs
Other Ricinus communis TFs

468 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI009409 Acyrthosiphon pisum ACYPI009409 I
HNF4 Aedes aegypti AAEL011323 I
ENSAMEG00000000001 Ailuropoda melanoleuca ENSAMEG00000000001 I
ENSAMEG00000003960 Ailuropoda melanoleuca ENSAMEG00000003960 I
Alligator_sinensis_CCG008420.1 Alligator sinensis Alligator_sinensis_CCG008420.1 I
Alligator_sinensis_CCG018847.1 Alligator sinensis Alligator_sinensis_CCG018847.1 I
ENSAPLG00000008950 Anas platyrhynchos ENSAPLG00000008950 I
ENSAPLG00000011331 Anas platyrhynchos ENSAPLG00000011331 I
ENSAPLG00000011794 Anas platyrhynchos ENSAPLG00000011794 I
ANCCAN_07383 Ancylostoma caninum ANCCAN_07383 I
ANCCAN_08267 Ancylostoma caninum ANCCAN_08267 I
ASIM_0001423201 Anisakis simplex ASIM_0001423201 I
HNF4G Anolis carolinensis ENSACAG00000013245 I
ENSACAG00000014360 Anolis carolinensis ENSACAG00000014360 I
HNF4A Anolis carolinensis ENSACAG00000016803 I
AARA006785 Anopheles arabiensis AARA006785 I
AATE016626 Anopheles atroparvus AATE016626 I
ACOM042130 Anopheles coluzzii ACOM042130 I
ACUA014332 Anopheles culicifacies ACUA014332 I
ADAC000761 Anopheles darlingi ADAC000761 I
AEPI001781 Anopheles epiroticus AEPI001781 I
AFAF003777 Anopheles farauti AFAF003777 I
AFUN007701 Anopheles funestus AFUN007701 I
AGAP002155 Anopheles gambiae AGAP002155 I
AMEC014718 Anopheles melas AMEC014718 I
AMEM007222 Anopheles merus AMEM007222 I
AMIN003110 Anopheles minimus AMIN003110 I
AQUA008987 Anopheles quadriannulatus AQUA008987 I
ASTEI00552 Anopheles stephensi ASTEI00552 I
GB45602 Apis mellifera GB45602 I
Afo_R002509 Aptenodytes forsteri Afo_R002509 I
Afo_R011426 Aptenodytes forsteri Afo_R011426 I
Afo_R013180 Aptenodytes forsteri Afo_R013180 I
ALUE_0000387101 Ascaris lumbricoides ALUE_0000387101 I
ASU_00859 Ascaris suum ASU_00859 I
ENSAMXG00000004326 Astyanax mexicanus ENSAMXG00000004326 I
ENSAMXG00000013618 Astyanax mexicanus ENSAMXG00000013618 I
ENSAMXG00000017366 Astyanax mexicanus ENSAMXG00000017366 I
ACEP17779 Atta cephalotes ACEP17779 I
BGLB013485 Biomphalaria glabrata BGLB013485 I
ENSBTAP00000010892-D1 Bos grunniens ENSBTAP00000010892-D1 I
ENSP00000343807-D1 Bos grunniens ENSP00000343807-D1 I
HNF4G Bos taurus ENSBTAG00000008280 I
HNF4A Bos taurus ENSBTAG00000012116 I
fgenesh2_pg.scaffold_57000050 Branchiostoma floridae fgenesh2_pg.scaffold_57000050 I
Brh_R007127 Buceros rhinoceros Brh_R007127 I
Brh_R012166 Buceros rhinoceros Brh_R012166 I
BXY_1057700 Bursaphelenchus xylophilus BXY_1057700 I
CBN11344 Caenorhabditis brenneri CBN11344 I
CBN14643 Caenorhabditis brenneri CBN14643 I
CBN18824 Caenorhabditis brenneri CBN18824 I
CBN19472 Caenorhabditis brenneri CBN19472 I
CBG03848 Caenorhabditis briggsae CBG03848 I
CBG04204 Caenorhabditis briggsae CBG04204 I
nhr-64 Caenorhabditis elegans WBGene00003654 I
nhr-69 Caenorhabditis elegans WBGene00003659 I
CJA14599 Caenorhabditis japonica CJA14599 I
CRE08089 Caenorhabditis remanei CRE08089 I
CRE30089 Caenorhabditis remanei CRE30089 I
HNF4G Callithrix jacchus ENSCJAG00000000541 I
Aan_R002978 Calypte anna Aan_R002978 I
Aan_R003465 Calypte anna Aan_R003465 I
Aan_R015831 Calypte anna Aan_R015831 I
Cflo_06352--NP_001011634.1_APIME Camponotus floridanus Cflo_06352--NP_001011634.1_APIME I
HNF4G Canis familiaris ENSCAFG00000008285 I
HNF4A Canis familiaris ENSCAFG00000009411 I
CapteG172322 Capitella teleta CapteG172322 I
HNF4A Cavia porcellus ENSCPOG00000006812 I
HNF4G Cavia porcellus ENSCPOG00000011625 I
Cmyd_10004185 Chelonia mydas Cmyd_10004185 I
Cmyd_10016711 Chelonia mydas Cmyd_10016711 I
Cmyd_10016927 Chelonia mydas Cmyd_10016927 I
ENSCSAG00000013470 Chlorocebus sabaeus ENSCSAG00000013470 I
ENSCSAG00000014124 Chlorocebus sabaeus ENSCSAG00000014124 I
HNF4G Choloepus hoffmanni ENSCHOG00000000938 I
CLEC003430 Cimex lectularius CLEC003430 I
ENSCING00000009566 Ciona intestinalis ENSCING00000009566 I
ENSCSAVG00000009430 Ciona savignyi ENSCSAVG00000009430 I
csin100643 Clonorchis sinensis csin100643 I
CGI_10027058 Crassostrea gigas CGI_10027058 I
KGM_18790 Danaus plexippus KGM_18790 I
hnf4a Danio rerio ENSDARG00000021494 I
hnf4g Danio rerio ENSDARG00000071565 I
CABZ01057488.2 Danio rerio ENSDARG00000104742 I
DAPPUDRAFT_59378 Daphnia pulex DAPPUDRAFT_59378 I
HNF4A Dasypus novemcinctus ENSDNOG00000031801 I
HNF4G Dasypus novemcinctus ENSDNOG00000035639 I
YQE_05727 Dendroctonus ponderosae YQE_05727 I
DICVIV_00955 Dictyocaulus viviparus DICVIV_00955 I
Hnf4a Dipodomys ordii ENSDORG00000005971 I
GF14359 Drosophila ananassae FBgn0091386 I
GG24056 Drosophila erecta FBgn0116195 I
GH13232 Drosophila grimshawi FBgn0120709 I
Hnf4 Drosophila melanogaster FBgn0004914 D
GI12430 Drosophila mojavensis FBgn0135187 I
GL26219 Drosophila persimilis FBgn0163801 I
GA21689 Drosophila pseudoobscura FBgn0081674 I
GM12759 Drosophila sechellia FBgn0167695 I
GD22387 Drosophila simulans FBgn0193793 I
GJ17882 Drosophila virilis FBgn0205050 I
GK18664 Drosophila willistoni FBgn0220662 I
GE10817 Drosophila yakuba FBgn0228657 I
ECANG7_07248 Echinococcus canadensis ECANG7_07248 I
EmuJ_000088800 Echinococcus multilocularis EmuJ_000088800 I
HNF4G Echinops telfairi ENSETEG00000003448 I
ENSETEG00000005706 Echinops telfairi ENSETEG00000005706 I
ENSETEG00000011451 Echinops telfairi ENSETEG00000011451 I
EVEC_0001195701 Enterobius vermicularis EVEC_0001195701 I
HNF4G Equus caballus ENSECAG00000000005 I
HNF4A Equus caballus ENSECAG00000024450 I
NR6A1 Erinaceus europaeus ENSEEUG00000001351 I
HNF4G Erinaceus europaeus ENSEEUG00000009253 I
HNF4A Felis catus ENSFCAG00000008178 I
HNF4G Felis catus ENSFCAG00000025545 I
ENSFALG00000005250 Ficedula albicollis ENSFALG00000005250 I
ENSFALG00000006678 Ficedula albicollis ENSFALG00000006678 I
ENSFALG00000008578 Ficedula albicollis ENSFALG00000008578 I
ENSGMOG00000001972 Gadus morhua ENSGMOG00000001972 I
ENSGMOG00000002967 Gadus morhua ENSGMOG00000002967 I
ENSGMOG00000011421 Gadus morhua ENSGMOG00000011421 I
HNF4A Gallus gallus ENSGALG00000004285 I
HNF4beta Gallus gallus ENSGALG00000005708 I
ENSGALG00000015670 Gallus gallus ENSGALG00000015670 I
hnf4g Gasterosteus aculeatus ENSGACG00000002422 I
hnf4a Gasterosteus aculeatus ENSGACG00000011485 I
Gfo_R000495 Geospiza fortis Gfo_R000495 I
Gfo_R005107 Geospiza fortis Gfo_R005107 I
Gfo_R005385 Geospiza fortis Gfo_R005385 I
HNF4A Gorilla gorilla ENSGGOG00000006988 I
HNF4G Gorilla gorilla ENSGGOG00000008488 I
HCOI00106000 Haemonchus contortus HCOI00106000 I
HCOI00891400 Haemonchus contortus HCOI00891400 I
HPLM_0001259401 Haemonchus placei HPLM_0001259401 I
Hsal_12926--NP_001011634.1_APIME Harpegnathos saltator Hsal_12926--NP_001011634.1_APIME I
HPBE_0000460501 Heligmosomoides bakeri HPBE_0000460501 I
HelroG67417 Helobdella robusta HelroG67417 I
HelroG68918 Helobdella robusta HelroG68918 I
HNF4A Homo sapiens ENSG00000101076 D
HNF4G Homo sapiens ENSG00000164749 D
TTAC_0000076101 Hydatigera taeniaeformis TTAC_0000076101 I
XP_002156561.1 Hydra magnipapillata XP_002156561.1 I
XP_002159483.1 Hydra magnipapillata XP_002159483.1 I
HmN_000254900 Hymenolepis microstoma HmN_000254900 I
ENSSTOG00000007181 Ictidomys tridecemlineatus ENSSTOG00000007181 I
ENSSTOG00000020202 Ictidomys tridecemlineatus ENSSTOG00000020202 I
ENSLACG00000000130 Latimeria chalumnae ENSLACG00000000130 I
ENSLACG00000013810 Latimeria chalumnae ENSLACG00000013810 I
ENSLACG00000022248 Latimeria chalumnae ENSLACG00000022248 I
ENSLOCG00000004238 Lepisosteus oculatus ENSLOCG00000004238 I
ENSLOCG00000013459 Lepisosteus oculatus ENSLOCG00000013459 I
LotgiG108689 Lottia gigantea LotgiG108689 I
HNF4G Loxodonta africana ENSLAFG00000020911 I
HNF4A Loxodonta africana ENSLAFG00000022279 I
LCUP010047 Lucilia cuprina LCUP010047 I
ENSP00000343807 Macaca fascicularis ENSP00000343807 I
ENSP00000379701 Macaca fascicularis ENSP00000379701 I
HNF4G Macaca mulatta ENSMMUG00000002774 I
HNF4A Macaca mulatta ENSMMUG00000006464 I
ENSMEUG00000001256 Macropus eugenii ENSMEUG00000001256 I
ENSMEUG00000006900 Macropus eugenii ENSMEUG00000006900 I
HNF4A Meleagris gallopavo ENSMGAG00000003970 I
ENSMGAG00000007214 Meleagris gallopavo ENSMGAG00000007214 I
HNF4G Meleagris gallopavo ENSMGAG00000011592 I
MhA1_Contig70.frz3.gene31 Meloidogyne hapla MhA1_Contig70.frz3.gene31 I
Minc02318 Meloidogyne incognita Minc02318 I
Minc05752 Meloidogyne incognita Minc05752 I
MCOS_0000266901 Mesocestoides corti MCOS_0000266901 I
HNF4A Microcebus murinus ENSMICG00000008240 I
ENSMODG00000004665 Monodelphis domestica ENSMODG00000004665 I
HNF4G Monodelphis domestica ENSMODG00000006805 I
HNF4A Monodelphis domestica ENSMODG00000016216 I
MDOA009609 Musca domestica MDOA009609 I
ENSMPUG00000010141 Mustela putorius furo ENSMPUG00000010141 I
ENSMPUG00000017669 Mustela putorius furo ENSMPUG00000017669 I
Hnf4g Mus musculus ENSMUSG00000017688 D
Hnf4a Mus musculus ENSMUSG00000017950 D
Myotis_brandtii_HNF4A_10025169 Myotis brandtii Myotis_brandtii_HNF4A_10025169 I
Myotis_brandtii_HNF4G_10031690 Myotis brandtii Myotis_brandtii_HNF4G_10031690 I
HNF4A Myotis lucifugus ENSMLUG00000000954 I
HNF4G Myotis lucifugus ENSMLUG00000004011 I
NECAME_11999 Necator americanus NECAME_11999 I
NECAME_12245 Necator americanus NECAME_12245 I
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I
NEMVEDRAFT_v1g89471 Nematostella vectensis NEMVEDRAFT_v1g89471 I
NBR_0001253301 Nippostrongylus brasiliensis NBR_0001253301 I
NBR_0001473401 Nippostrongylus brasiliensis NBR_0001473401 I
ENSNLEG00000001920 Nomascus leucogenys ENSNLEG00000001920 I
ENSNLEG00000006596 Nomascus leucogenys ENSNLEG00000006596 I
HNF4G Ochotona princeps ENSOPRG00000006889 I
HNF4A Ochotona princeps ENSOPRG00000014280 I
Ocbimv22001693m.g Octopus bimaculoides Ocbimv22001693m.g I
Ogr04901 Ophisaurus gracilis Ogr04901 I
Ogr08849 Ophisaurus gracilis Ogr08849 I
T265_03785 Opisthorchis viverrini T265_03785 I
ENSONIG00000005911 Oreochromis niloticus ENSONIG00000005911 I
ENSONIG00000014490 Oreochromis niloticus ENSONIG00000014490 I
ENSONIG00000016515 Oreochromis niloticus ENSONIG00000016515 I
ENSOANG00000006363 Ornithorhynchus anatinus ENSOANG00000006363 I
HNF4G Ornithorhynchus anatinus ENSOANG00000011349 I
HNF4A Oryctolagus cuniculus ENSOCUG00000006841 I
ENSOCUG00000012041 Oryctolagus cuniculus ENSOCUG00000012041 I
hnf4g Oryzias latipes ENSORLG00000006996 I
HNF4G Otolemur garnettii ENSOGAG00000010660 I
HNF4A Otolemur garnettii ENSOGAG00000029426 I
ENSOARG00000003928 Ovis aries ENSOARG00000003928 I
ENSOARG00000007140 Ovis aries ENSOARG00000007140 I
HNF4G Pan troglodytes ENSPTRG00000020357 I
ENSPANG00000001380 Papio anubis ENSPANG00000001380 I
ENSPANG00000026281 Papio anubis ENSPANG00000026281 I
PTRK_0000862000 Parastrongyloides trichosuri PTRK_0000862000 I
PHUM477600 Pediculus humanus PHUM477600 I
ENSPSIG00000012689 Pelodiscus sinensis ENSPSIG00000012689 I
ENSPSIG00000017636 Pelodiscus sinensis ENSPSIG00000017636 I
ENSPMAG00000005852 Petromyzon marinus ENSPMAG00000005852 I
ENSPFOG00000000135 Poecilia formosa ENSPFOG00000000135 I
ENSPFOG00000001827 Poecilia formosa ENSPFOG00000001827 I
ENSPFOG00000009018 Poecilia formosa ENSPFOG00000009018 I
Pvit_00057 Pogona vitticeps Pvit_00057 I
Pvit_08765 Pogona vitticeps Pvit_08765 I
Pvit_09735 Pogona vitticeps Pvit_09735 I
ENSPPYG00000011031 Pongo abelii ENSPPYG00000011031 I
ENSPPYG00000018686 Pongo abelii ENSPPYG00000018686 I
scaffold1039-EXSNAP2012.5 Pristionchus exspectatus scaffold1039-EXSNAP2012.5 I
HNF4A Procavia capensis ENSPCAG00000010776 I
HNF4G Pteropus vampyrus ENSPVAG00000001778 I
HNF4A Pteropus vampyrus ENSPVAG00000007420 I
Hnf4a Rattus norvegicus ENSRNOG00000008895 I
Hnf4g Rattus norvegicus ENSRNOG00000008971 I
RPRC001064 Rhodnius prolixus RPRC001064 I
RPRC008212 Rhodnius prolixus RPRC008212 I
nRc.2.0.1.g00257 Romanomermis culicivorax nRc.2.0.1.g00257 I
nRc.2.0.1.g16639 Romanomermis culicivorax nRc.2.0.1.g16639 I
Sakowv30022465m.g Saccoglossus kowalevskii Sakowv30022465m.g I
ENSSHAG00000007273 Sarcophilus harrisii ENSSHAG00000007273 I
ENSSHAG00000007693 Sarcophilus harrisii ENSSHAG00000007693 I
ENSSHAG00000009578 Sarcophilus harrisii ENSSHAG00000009578 I
SSLN_0001625701 Schistocephalus solidus SSLN_0001625701 I
A_04980 Schistosoma haematobium A_04980 I
B_00901 Schistosoma haematobium B_00901 I
Sjc_0074110 Schistosoma japonicum Sjc_0074110 I
Sjc_0122030 Schistosoma japonicum Sjc_0122030 I
Smp_150630 Schistosoma mansoni Smp_150630 I
Smp_174700 Schistosoma mansoni Smp_174700 I
SMRZ_0001026501 Schistosoma margrebowiei SMRZ_0001026501 I
SMTD_0001673901 Schistosoma mattheei SMTD_0001673901 I
SROB_0001376101 Schistosoma rodhaini SROB_0001376101 I
SMU15037562 Schmidtea mediterranea SMU15037562 I
SBAD_0000391501 Soboliphyme baturini SBAD_0000391501 I
SINV18643 Solenopsis invicta SINV18643 I
L596_g11029 Steinernema carpocapsae L596_g11029 I
L596_g11032 Steinernema carpocapsae L596_g11032 I
L889_g17254 Steinernema feltiae L889_g17254 I
L898_g7537 Steinernema monticolum L898_g7537 I
L892_g1520 Steinernema scapterisci L892_g1520 I
L892_g1523 Steinernema scapterisci L892_g1523 I
SMAR012517 Strigamia maritima SMAR012517 I
SMAR013556 Strigamia maritima SMAR013556 I
SMAR014405 Strigamia maritima SMAR014405 I
SPU_021192 Strongylocentrotus purpuratus SPU_021192 I
SPAL_0001213800 Strongyloides papillosus SPAL_0001213800 I
SSTP_0001140400 Strongyloides stercoralis SSTP_0001140400 I
SVE_0639400 Strongyloides venezuelensis SVE_0639400 I
HNF4A Sus scrofa ENSSSCG00000007371 I
SMUV_0000369301 Syphacia muris SMUV_0000369301 I
TsM_000004500 Taenia solium TsM_000004500 I
ENSTGUG00000004174 Taeniopygia guttata ENSTGUG00000004174 I
HNF4A Taeniopygia guttata ENSTGUG00000005271 I
HNF4G Taeniopygia guttata ENSTGUG00000011585 I
ENSTGUG00000015669 Taeniopygia guttata ENSTGUG00000015669 I
ENSTGUG00000016715 Taeniopygia guttata ENSTGUG00000016715 I
hnf4g Takifugu rubripes ENSTRUG00000000198 I
hnf4a Takifugu rubripes ENSTRUG00000009982 I
ENSTSYG00000007661 Tarsius syrichta ENSTSYG00000007661 I
TELCIR_10098 Teladorsagia circumcincta TELCIR_10098 I
TELCIR_16589 Teladorsagia circumcincta TELCIR_16589 I
tetur03g02550 Tetranychus urticae tetur03g02550 I
tetur05g04280 Tetranychus urticae tetur05g04280 I
hnf4g Tetraodon nigroviridis ENSTNIG00000008126 I
hnf4a Tetraodon nigroviridis ENSTNIG00000012436 I
TCNE_0001304301 Toxocara canis TCNE_0001304301 I
TC008726 Tribolium castaneum TC008726 I
D917_06779 Trichinella nativa D917_06779 I
EFV54558 Trichinella spiralis EFV54558 I
TRE_0001109901 Trichobilharzia regenti TRE_0001109901 I
TriadG50786 Trichoplax adhaerens TriadG50786 I
TMUE_s0002006800 Trichuris muris TMUE_s0002006800 I
HNF4G Tupaia belangeri ENSTBEG00000010662 I
NR2E1 Tursiops truncatus ENSTTRG00000008863 I
HNF4A Tursiops truncatus ENSTTRG00000013004 I
Tal_R001232 Tyto alba Tal_R001232 I
Tal_R003083 Tyto alba Tal_R003083 I
Tal_R009229 Tyto alba Tal_R009229 I
HNF4G Vicugna pacos ENSVPAG00000009648 I
hnf4a.S Xenopus laevis XB-GENE-864872 I
hnf4b.S Xenopus laevis XB-GENE-865553 I
hnf4b Xenopus tropicalis XB-GENE-485826 I
hnf4g Xenopus tropicalis XB-GENE-487527 I
ENSXMAG00000000648 Xiphophorus maculatus ENSXMAG00000000648 I
ENSXMAG00000001220 Xiphophorus maculatus ENSXMAG00000001220 I
ENSXMAG00000007901 Xiphophorus maculatus ENSXMAG00000007901 I
L798_09079 Zootermopsis nevadensis L798_09079 I