cassava42041.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava42041.valid.m1 T333938_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.437 0.551
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.437 0.551
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.431 0.536
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.431 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42041.valid.m1 Sox 230 298

Links

Other Sox family TFs
Other Manihot esculenta TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_06400 Arthroderma benhamiae ARB_06400 N
MCYG_07778 Arthroderma otae MCYG_07778 N
MCYG_07778 Microsporum canis MCYG_07778 N
MGYG_04981 Microsporum gypseum MGYG_04981 N
TEQG_00252 Trichophyton equinum TEQG_00252 N
H101_07154 Trichophyton interdigitale H101_07154 N
H102_06501 Trichophyton rubrum H102_06501 N
H105_06538 Trichophyton soudanense H105_06538 N
TESG_03415 Trichophyton tonsurans TESG_03415 N