fgenesh1_pg.scaffold_35000054 (Monosiga brevicollis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.scaffold_35000054 T334123_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.576 0.464
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.567 0.507
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.539 0.493
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.467 0.304
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.467 0.304
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.467 0.304
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.467 0.304
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.467 0.304
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_35000054 Sox 107 175

Links

Other Sox family TFs
Other Monosiga brevicollis TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02727 Aegilops tauschii F775_02727 I
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I
RAP2-11 Arabidopsis thaliana AT5G19790 D
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I
Bo2g018360 Brassica oleracea Bo2g018360 I
Bo3g013830 Brassica oleracea Bo3g013830 I
Bo9g152440 Brassica oleracea Bo9g152440 I
Bra002262 Brassica rapa Bra002262 I
Bra006518 Brassica rapa Bra006518 I
Bra020063 Brassica rapa Bra020063 I
PK13330.1 Cannabis sativa PK13330.1 I
PK25269.1 Cannabis sativa PK25269.1 I
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I
Carubv10002733m.g Capsella rubella Carubv10002733m.g I
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I
Ca_08232 Cicer arietinum Ca_08232 I
Ca_10494 Cicer arietinum Ca_10494 I
Cla010474 Citrullus lanatus Cla010474 I
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I
Cucsa.158080 Cucumis sativus Cucsa.158080 I
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I
GLYMA13G05690 Glycine max GLYMA13G05690 I
GLYMA16G04410 Glycine max GLYMA16G04410 I
GLYMA18G49761 Glycine max GLYMA18G49761 I
GLYMA19G03120 Glycine max GLYMA19G03120 I
GLYMA19G03165 Glycine max GLYMA19G03165 I
GLYMA19G29000 Glycine max GLYMA19G29000 I
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I
MLOC_7255 Hordeum vulgare MLOC_7255 I
LPERR07G05890 Leersia perrieri LPERR07G05890 I
Lus10001298.g Linum usitatissimum Lus10001298.g I
Lus10012703.g Linum usitatissimum Lus10012703.g I
Lus10036793.g Linum usitatissimum Lus10036793.g I
Lus10037137.g Linum usitatissimum Lus10037137.g I
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I
MDP0000177547 Malus domestica MDP0000177547 I
MDP0000276536 Malus domestica MDP0000276536 I
MDP0000551969 Malus domestica MDP0000551969 I
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I
cassava4189.m1 Manihot esculenta cassava4189.m1 I
cassava4942.m1 Manihot esculenta cassava4942.m1 I
cassava9290.m1 Manihot esculenta cassava9290.m1 I
cassava9303.m1 Manihot esculenta cassava9303.m1 I
MTR_6g012970 Medicago truncatula MTR_6g012970 I
MTR_7g011630 Medicago truncatula MTR_7g011630 I
MTR_7g085810 Medicago truncatula MTR_7g085810 I
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I
OBART07G06690 Oryza barthii OBART07G06690 I
OBART12G17080 Oryza barthii OBART12G17080 I
OB07G15030 Oryza brachyantha OB07G15030 I
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I
BGIOSGA025360 Oryza indica BGIOSGA025360 I
BGIOSGA037681 Oryza indica BGIOSGA037681 I
OLONG_022569 Oryza longistaminata OLONG_022569 I
OMERI11G15200 Oryza meridionalis OMERI11G15200 I
ONIVA01G29960 Oryza nivara ONIVA01G29960 I
ONIVA12G15550 Oryza nivara ONIVA12G15550 I
OPUNC12G15550 Oryza punctata OPUNC12G15550 I
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I
OS07G0204000 Oryza sativa OS07G0204000 I
OS12G0582900 Oryza sativa OS12G0582900 I
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I
Pavir.J28133 Panicum virgatum Pavir.J28133 I
Pavir.J28151 Panicum virgatum Pavir.J28151 I
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I
Pm015931 Prunus mume Pm015931 I
Pm025326 Prunus mume Pm025326 I
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I
29635.m000461 Ricinus communis 29635.m000461 I
29813.m001543 Ricinus communis 29813.m001543 I
30084.m000185 Ricinus communis 30084.m000185 I
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I
Si024417m.g Setaria italica Si024417m.g I
Si033237m.g Setaria italica Si033237m.g I
Si038848m.g Setaria italica Si038848m.g I
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I
Sb01g014810 Sorghum bicolor Sb01g014810 I
Sb02g006023 Sorghum bicolor Sb02g006023 I
Sb08g019530 Sorghum bicolor Sb08g019530 I
TCM_011632 Theobroma cacao TCM_011632 I
TCM_018659 Theobroma cacao TCM_018659 I
TCM_025913 Theobroma cacao TCM_025913 I
TCM_040015 Theobroma cacao TCM_040015 I
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I
RAP2.11 Vitis vinifera VIT_08s0007g07250 I
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I
GRMZM2G010100 Zea mays GRMZM2G010100 I
GRMZM2G039112 Zea mays GRMZM2G039112 I