cassava9290.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava9290.m1 T006979_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.821 0.961
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.821 0.961
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9290.m1 AP2 35 86

Links

Other AP2 family TFs
Other Manihot esculenta TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.831
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.822
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.822
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.822
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.822
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.822
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.822
OB07G15030 Oryza brachyantha OB07G15030 I 0.822
OBART07G06690 Oryza barthii OBART07G06690 I 0.822
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.822
OS07G0204000 Oryza sativa OS07G0204000 I 0.822
TCM_040015 Theobroma cacao TCM_040015 I 0.822
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.822
Pm025326 Prunus mume Pm025326 I 0.821
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.821
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.821
Ca_08232 Cicer arietinum Ca_08232 I 0.821
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.821
Bo9g152440 Brassica oleracea Bo9g152440 I 0.821
30084.m000185 Ricinus communis 30084.m000185 I 0.821
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.821
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.821
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.821
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.821
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.821
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.821
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.821
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.821
MDP0000177547 Malus domestica MDP0000177547 I 0.821
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.821
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.821
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.821
Bo3g013830 Brassica oleracea Bo3g013830 I 0.821
Bra020063 Brassica rapa Bra020063 I 0.821
Bra002262 Brassica rapa Bra002262 I 0.821
Bra006518 Brassica rapa Bra006518 I 0.821
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.821
Bo2g018360 Brassica oleracea Bo2g018360 I 0.821
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.821
TCM_025913 Theobroma cacao TCM_025913 I 0.821
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.821
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.819
Si033237m.g Setaria italica Si033237m.g I 0.819
mgf022665m Mimulus guttatus mgf022665m I 0.819
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.818
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.818
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.818
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.818
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.817
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.817
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.816
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.816
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.815
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.813
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.813
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.812
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.812
Cla010474 Citrullus lanatus Cla010474 I 0.812
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.812
Si024417m.g Setaria italica Si024417m.g I 0.812
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.812
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.812
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.812
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.812
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.812
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.812
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.812
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.812
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.812
Si038848m.g Setaria italica Si038848m.g I 0.809
PK13330.1 Cannabis sativa PK13330.1 I 0.809
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.809
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.809
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.809
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.809
MDP0000551969 Malus domestica MDP0000551969 I 0.809
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.809
29635.m000461 Ricinus communis 29635.m000461 I 0.809
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.809
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.809
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.809
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.809
Pm015931 Prunus mume Pm015931 I 0.809
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.809
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.809
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.809
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.809
MDP0000276536 Malus domestica MDP0000276536 I 0.809
Ca_10494 Cicer arietinum Ca_10494 I 0.809
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.809
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.809
TCM_018659 Theobroma cacao TCM_018659 I 0.809
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.809
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.809
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.809
OS12G0582900 Oryza sativa OS12G0582900 I 0.809
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.809
OBART12G17080 Oryza barthii OBART12G17080 I 0.809
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.809
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.809
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.809
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.809
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.809
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.809
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.809
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.809
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.809
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.809
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.809
F775_02727 Aegilops tauschii F775_02727 I 0.809
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.808
Cla012318 Citrullus lanatus Cla012318 I 0.808
29813.m001543 Ricinus communis 29813.m001543 I 0.807
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.807
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.807
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.807
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.807
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.807
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.807
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.805
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.804
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.804
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.800
mgf023693m Mimulus guttatus mgf023693m I 0.798
mgf022810m Mimulus guttatus mgf022810m I 0.798
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.795
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.792
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.789
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.787
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.786
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.781
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.781
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.779
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.774
Pm000004 Prunus mume Pm000004 I 0.771
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.771
TCM_011632 Theobroma cacao TCM_011632 I 0.771
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.771
MDP0000525933 Malus domestica MDP0000525933 I 0.771
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.771
F775_04303 Aegilops tauschii F775_04303 I 0.770
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.770
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.765
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.763
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.760
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.758
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.758
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.754
MDP0000128326 Malus domestica MDP0000128326 I 0.754
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.751
PK25269.1 Cannabis sativa PK25269.1 I 0.749
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.749
30174.m009031 Ricinus communis 30174.m009031 I 0.746
Cla021590 Citrullus lanatus Cla021590 I 0.743
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.743
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.741
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.741
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.741
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.740
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.740
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.740
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.739
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.739
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.739
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.739
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.739
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.738
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.737
mgf018851m Mimulus guttatus mgf018851m I 0.737
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.737
Pm008788 Prunus mume Pm008788 I 0.737
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.737
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.737
MDP0000133476 Malus domestica MDP0000133476 I 0.737
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.737
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.737
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.737
TCM_005425 Theobroma cacao TCM_005425 I 0.737
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.737
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.737
MDP0000138669 Malus domestica MDP0000138669 I 0.737
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.737
Si032213m.g Setaria italica Si032213m.g I 0.736
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.736
OB09G23520 Oryza brachyantha OB09G23520 I 0.735
30174.m008961 Ricinus communis 30174.m008961 I 0.733
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.731
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.730
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.730
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.729
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.728
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.727
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.726
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.725
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.725
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.724
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.723
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.723
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.721
MDP0000197375 Malus domestica MDP0000197375 I 0.719
Ca_25424 Cicer arietinum Ca_25424 I 0.719
MDP0000157628 Malus domestica MDP0000157628 I 0.719
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.719
Pm030235 Prunus mume Pm030235 I 0.719
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.717
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.716
Ca_16397 Cicer arietinum Ca_16397 I 0.716
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.716
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.716
TCM_014471 Theobroma cacao TCM_014471 I 0.716
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.715
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.715
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.713
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.712
Ca_00417 Cicer arietinum Ca_00417 I 0.710
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.709
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.709
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.709
Si030686m.g Setaria italica Si030686m.g I 0.709
OS07G0575000 Oryza sativa OS07G0575000 I 0.707
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.707
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.707
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.707
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.707
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.707
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.707
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.707
OBART07G19610 Oryza barthii OBART07G19610 I 0.707
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.707
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.707
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.707
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.707
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.704
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.702
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.700
PK28640.1 Cannabis sativa PK28640.1 I 0.700
TCM_015579 Theobroma cacao TCM_015579 I 0.700
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.700
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.700
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.697
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.697
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.696
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.696
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.695
Si027288m.g Setaria italica Si027288m.g I 0.695
30068.m002623 Ricinus communis 30068.m002623 I 0.693
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.692
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.691
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.691
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.690
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.690
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.690
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.689
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.689
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.688
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.687
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.685
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.685
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.684
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.678
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.677