CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
e_gw1.233.44.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
e_gw1.233.44.1
T007143_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.677
0.756
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.677
0.756
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.233.44.1
AP2
4
49
KRFVGVRQRPSGRWVAEIKDTTQKIRLWLGTFDSAEEGAKAYDSGM
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw1.64.98.1
Physcomitrella patens
e_gw1.64.98.1
I
0.796
e_gw1.195.59.1
Physcomitrella patens
e_gw1.195.59.1
N
0.796
Eucgr.I02007
Eucalyptus grandis
Eucgr.I02007
I
0.697
Lus10037137.g
Linum usitatissimum
Lus10037137.g
I
0.691
Lus10036793.g
Linum usitatissimum
Lus10036793.g
I
0.691
cassava9290.m1
Manihot esculenta
cassava9290.m1
I
0.690
Eucgr.B03605
Eucalyptus grandis
Eucgr.B03605
I
0.690
Cla010474
Citrullus lanatus
Cla010474
I
0.689
Ca_10494
Cicer arietinum
Ca_10494
I
0.689
VIT_14s0108g01220
Vitis vinifera
VIT_14s0108g01220
I
0.689
Pm015931
Prunus mume
Pm015931
I
0.689
29635.m000461
Ricinus communis
29635.m000461
I
0.689
PK13330.1
Cannabis sativa
PK13330.1
I
0.689
cassava1773.valid.m1
Manihot esculenta
cassava1773.valid.m1
I
0.689
Traes_5DS_1BDB9837E
Triticum aestivum
Traes_5DS_1BDB9837E
I
0.689
Si038848m.g
Setaria italica
Si038848m.g
I
0.689
POPTR_0017s12370
Populus trichocarpa
POPTR_0017s12370
I
0.689
PGSC0003DMG400001343
Solanum tuberosum
PGSC0003DMG400001343
I
0.689
PRUPE_ppa025010mg
Prunus persica
PRUPE_ppa025010mg
I
0.689
Sb01g014810
Sorghum bicolor
Sb01g014810
I
0.689
Si024417m.g
Setaria italica
Si024417m.g
I
0.689
Sb08g019530
Sorghum bicolor
Sb08g019530
I
0.689
Cucsa.158080
Cucumis sativus
Cucsa.158080
I
0.689
SapurV1A.0322s0110
Salix purpurea
SapurV1A.0322s0110
I
0.689
Pavir.Ib03934
Panicum virgatum
Pavir.Ib03934
I
0.689
Lus10012703.g
Linum usitatissimum
Lus10012703.g
I
0.689
Lus10001298.g
Linum usitatissimum
Lus10001298.g
I
0.689
Pavir.Ia01300
Panicum virgatum
Pavir.Ia01300
I
0.689
MDP0000276536
Malus domestica
MDP0000276536
I
0.689
orange1.1g046337m.g
Citrus sinensis
orange1.1g046337m.g
I
0.689
MDP0000551969
Malus domestica
MDP0000551969
I
0.689
Gorai.006G013600
Gossypium raimondii
Gorai.006G013600
I
0.689
gene04400-v1.0-hybrid
Fragaria vesca
gene04400-v1.0-hybrid
I
0.689
Aquca_002_00706
Aquilegia coerulea
Aquca_002_00706
I
0.689
Pavir.J28151
Panicum virgatum
Pavir.J28151
I
0.689
Ciclev10013796m.g
Citrus clementina
Ciclev10013796m.g
I
0.689
OS12G0582900
Oryza sativa
OS12G0582900
I
0.689
evm.TU.supercontig_14.126
Carica papaya
evm.TU.supercontig_14.126
I
0.689
Pavir.J28133
Panicum virgatum
Pavir.J28133
I
0.689
Pavir.Cb00448
Panicum virgatum
Pavir.Cb00448
I
0.689
TCM_018659
Theobroma cacao
TCM_018659
I
0.689
MLOC_7255
Hordeum vulgare
MLOC_7255
I
0.689
GSMUA_Achr4G28070_001
Musa acuminata
GSMUA_Achr4G28070_001
I
0.689
MTR_6g012970
Medicago truncatula
MTR_6g012970
I
0.689
OBART12G17080
Oryza barthii
OBART12G17080
I
0.689
OMERI11G15200
Oryza meridionalis
OMERI11G15200
I
0.689
OGLUM12G18720
Oryza glumaepatula
OGLUM12G18720
I
0.689
GRMZM2G039112
Zea mays
GRMZM2G039112
I
0.689
GRMZM2G010100
Zea mays
GRMZM2G010100
I
0.689
F775_02727
Aegilops tauschii
F775_02727
I
0.689
BGIOSGA037681
Oryza indica
BGIOSGA037681
I
0.689
GLYMA13G05690
Glycine max
GLYMA13G05690
I
0.689
GLYMA19G03120
Glycine max
GLYMA19G03120
I
0.689
GLYMA19G03165
Glycine max
GLYMA19G03165
I
0.689
ONIVA12G15550
Oryza nivara
ONIVA12G15550
I
0.689
MTR_7g011630
Medicago truncatula
MTR_7g011630
I
0.689
ORUFI12G19000
Oryza rufipogon
ORUFI12G19000
I
0.689
ORGLA12G0200400
Oryza glaberrima
ORGLA12G0200400
I
0.689
OPUNC12G15550
Oryza punctata
OPUNC12G15550
I
0.689
29813.m001543
Ricinus communis
29813.m001543
I
0.687
cassava4189.m1
Manihot esculenta
cassava4189.m1
I
0.687
Ciclev10033847m.g
Citrus clementina
Ciclev10033847m.g
I
0.687
Gorai.008G178900
Gossypium raimondii
Gorai.008G178900
I
0.687
orange1.1g046190m.g
Citrus sinensis
orange1.1g046190m.g
I
0.687
SapurV1A.1886s0020
Salix purpurea
SapurV1A.1886s0020
I
0.687
TCM_011632
Theobroma cacao
TCM_011632
I
0.687
PK25269.1
Cannabis sativa
PK25269.1
I
0.686
cassava4942.m1
Manihot esculenta
cassava4942.m1
I
0.685
cassava9303.m1
Manihot esculenta
cassava9303.m1
I
0.683
Aquca_004_00669
Aquilegia coerulea
Aquca_004_00669
I
0.681
PGSC0003DMG400025151
Solanum tuberosum
PGSC0003DMG400025151
I
0.680
Solyc02g067020.1
Solanum lycopersicum
Solyc02g067020.1
I
0.680
POPTR_0008s09080
Populus trichocarpa
POPTR_0008s09080
I
0.680
GLYMA18G49761
Glycine max
GLYMA18G49761
I
0.680
BGIOSGA025360
Oryza indica
BGIOSGA025360
I
0.677
Gorai.013G244500
Gossypium raimondii
Gorai.013G244500
I
0.677
SapurV1A.0918s0170
Salix purpurea
SapurV1A.0918s0170
I
0.677
gene16598-v1.0-hybrid
Fragaria vesca
gene16598-v1.0-hybrid
I
0.677
GLYMA19G29000
Glycine max
GLYMA19G29000
I
0.677
Bo2g018360
Brassica oleracea
Bo2g018360
I
0.677
chr1.CM0371.120.nc
Lotus japonicus
chr1.CM0371.120.nc
I
0.677
GLYMA16G04410
Glycine max
GLYMA16G04410
I
0.677
PRUPE_ppa016109mg
Prunus persica
PRUPE_ppa016109mg
I
0.677
Bra020063
Brassica rapa
Bra020063
I
0.677
Bra006518
Brassica rapa
Bra006518
I
0.677
Bo9g152440
Brassica oleracea
Bo9g152440
I
0.677
Thhalv10015715m.g
Eutrema salsugineum
Thhalv10015715m.g
I
0.677
Bo3g013830
Brassica oleracea
Bo3g013830
I
0.677
MDP0000177547
Malus domestica
MDP0000177547
I
0.677
POPTR_0003s21090
Populus trichocarpa
POPTR_0003s21090
I
0.677
POPTR_0001s04190
Populus trichocarpa
POPTR_0001s04190
I
0.677
Bra002262
Brassica rapa
Bra002262
I
0.677
LPERR07G05890
Leersia perrieri
LPERR07G05890
I
0.677
OLONG_022569
Oryza longistaminata
OLONG_022569
I
0.677
Ca_08232
Cicer arietinum
Ca_08232
I
0.677
OGLUM07G06400
Oryza glumaepatula
OGLUM07G06400
I
0.677
Pm025326
Prunus mume
Pm025326
I
0.677
RAP2.11
Arabidopsis lyrata
scaffold_602074.1
I
0.677
Si033237m.g
Setaria italica
Si033237m.g
I
0.677
RAP2.11
Vitis vinifera
VIT_08s0007g07250
I
0.677
RAP2-11
Arabidopsis thaliana
AT5G19790
D
0.677
TCM_025913
Theobroma cacao
TCM_025913
I
0.677
TCM_040015
Theobroma cacao
TCM_040015
I
0.677
ONIVA01G29960
Oryza nivara
ONIVA01G29960
I
0.677
30084.m000185
Ricinus communis
30084.m000185
I
0.677
OBART07G06690
Oryza barthii
OBART07G06690
I
0.677
Cagra.1268s0022
Capsella grandiflora
Cagra.1268s0022
I
0.677
Bostr.26527s0221
Boechera stricta
Bostr.26527s0221
I
0.677
Carubv10002733m.g
Capsella rubella
Carubv10002733m.g
I
0.677
GSMUA_Achr4G28640_001
Musa acuminata
GSMUA_Achr4G28640_001
I
0.677
ORUFI07G06610
Oryza rufipogon
ORUFI07G06610
I
0.677
Sb02g006023
Sorghum bicolor
Sb02g006023
I
0.677
ORGLA07G0057000
Oryza glaberrima
ORGLA07G0057000
I
0.677
cassava23953.valid.m1
Manihot esculenta
cassava23953.valid.m1
I
0.677
OB07G15030
Oryza brachyantha
OB07G15030
I
0.677
MTR_7g085810
Medicago truncatula
MTR_7g085810
I
0.677
OS07G0204000
Oryza sativa
OS07G0204000
I
0.677
evm.TU.supercontig_51.136
Carica papaya
evm.TU.supercontig_51.136
I
0.677