Gorai.013G115000 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.013G115000 T008709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.784 0.902
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.784 0.902
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G115000.1 AP2 37 88

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf023693m Mimulus guttatus mgf023693m I 0.798
mgf022810m Mimulus guttatus mgf022810m I 0.798
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.798
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.789
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.786
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.786
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.786
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.786
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.786
TCM_025913 Theobroma cacao TCM_025913 I 0.786
Ca_08232 Cicer arietinum Ca_08232 I 0.786
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.786
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.786
MDP0000177547 Malus domestica MDP0000177547 I 0.786
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.786
Pm025326 Prunus mume Pm025326 I 0.786
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.786
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.786
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.786
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.784
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.784
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.784
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.784
OBART07G06690 Oryza barthii OBART07G06690 I 0.784
Bo3g013830 Brassica oleracea Bo3g013830 I 0.784
Bra006518 Brassica rapa Bra006518 I 0.784
Bo2g018360 Brassica oleracea Bo2g018360 I 0.784
30084.m000185 Ricinus communis 30084.m000185 I 0.784
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.784
OS07G0204000 Oryza sativa OS07G0204000 I 0.784
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.784
Bo9g152440 Brassica oleracea Bo9g152440 I 0.784
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.784
OB07G15030 Oryza brachyantha OB07G15030 I 0.784
Bra020063 Brassica rapa Bra020063 I 0.784
Bra002262 Brassica rapa Bra002262 I 0.784
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.784
TCM_040015 Theobroma cacao TCM_040015 I 0.784
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.784
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.784
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.784
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.784
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.784
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.784
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.783
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.783
mgf022665m Mimulus guttatus mgf022665m I 0.783
Cla012318 Citrullus lanatus Cla012318 I 0.783
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.782
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.781
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.781
Si033237m.g Setaria italica Si033237m.g I 0.781
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.781
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.781
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.781
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.781
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.781
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.780
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.779
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.779
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.778
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.777
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.776
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.776
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.774
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.770
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.764
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.760
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.758
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.758
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.756
Cla010474 Citrullus lanatus Cla010474 I 0.752
Si024417m.g Setaria italica Si024417m.g I 0.752
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.752
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.752
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.752
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.752
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.752
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.752
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.752
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.752
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.752
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.752
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.752
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.749
Pm015931 Prunus mume Pm015931 I 0.749
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.749
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.749
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.749
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.749
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.749
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.749
29635.m000461 Ricinus communis 29635.m000461 I 0.749
Ca_10494 Cicer arietinum Ca_10494 I 0.749
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.749
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.749
OBART12G17080 Oryza barthii OBART12G17080 I 0.749
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.749
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.749
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.749
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.749
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.749
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.749
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.749
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.749
PK13330.1 Cannabis sativa PK13330.1 I 0.749
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.749
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.749
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.749
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.749
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.749
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.749
MDP0000128326 Malus domestica MDP0000128326 I 0.749
OS12G0582900 Oryza sativa OS12G0582900 I 0.749
MDP0000551969 Malus domestica MDP0000551969 I 0.749
MDP0000276536 Malus domestica MDP0000276536 I 0.749
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.749
Si038848m.g Setaria italica Si038848m.g I 0.749
TCM_018659 Theobroma cacao TCM_018659 I 0.749
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.749
F775_02727 Aegilops tauschii F775_02727 I 0.749
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.749
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.747
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.747
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.747
29813.m001543 Ricinus communis 29813.m001543 I 0.747
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.747
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.747
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.745
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.744
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.744
MDP0000525933 Malus domestica MDP0000525933 I 0.743
Pm000004 Prunus mume Pm000004 I 0.743
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.743
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.743
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.740
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.736
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.736
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.732
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.731
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.731
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.724
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.722
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.719
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.712
TCM_011632 Theobroma cacao TCM_011632 I 0.711
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.711
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.711
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.710
F775_04303 Aegilops tauschii F775_04303 I 0.710
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.708
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.704
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.704
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.702
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.699
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.694
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.691
PK25269.1 Cannabis sativa PK25269.1 I 0.689
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.687
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.687
30174.m009031 Ricinus communis 30174.m009031 I 0.686
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.686
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.685
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.684
Cla021590 Citrullus lanatus Cla021590 I 0.684
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.681
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.681
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.681
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.680
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.680
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.680
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.680
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.679
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.679
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.679
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.678
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.677
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.677
Pm008788 Prunus mume Pm008788 I 0.677
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.677
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.677
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.677
mgf018851m Mimulus guttatus mgf018851m I 0.677
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.677
TCM_005425 Theobroma cacao TCM_005425 I 0.677
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.677
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.677
MDP0000138669 Malus domestica MDP0000138669 I 0.677
MDP0000133476 Malus domestica MDP0000133476 I 0.677
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.677
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.677