Aquca_020_00105 (Aquilegia coerulea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Aquca_020_00105 T334372_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.741 1.000
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.741 1.000
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.630 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.630 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_020_00105.1 Sox 136 179
Aquca_020_00105.2 Sox 111 154
Aquca_020_00105.3 Sox 110 153
Aquca_020_00105.4 Sox 111 154
Aquca_020_00105.7 Sox 60 103
Aquca_020_00105.8 Sox 60 103
Aquca_020_00105.9 Sox 20 63

Links

Other Sox family TFs
Other Aquilegia coerulea TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000006567 Astyanax mexicanus ENSAMXG00000006567 N
KMT2C Oryzias latipes ENSORLG00000003857 N
ENSPFOG00000001796 Poecilia formosa ENSPFOG00000001796 N
KMT2C Takifugu rubripes ENSTRUG00000017487 N
ENSTNIG00000013539 Tetraodon nigroviridis ENSTNIG00000013539 N
ENSXMAG00000004978 Xiphophorus maculatus ENSXMAG00000004978 N