Lus10001909.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10001909.g T334557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.537 0.681
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.537 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001909 Sox 174 241
Lus10001909 Sox 292 358
Lus10001909 Sox 420 488

Links

Other Sox family TFs
Other Linum usitatissimum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N 0.000
M378DRAFT_155533 Amanita muscaria M378DRAFT_155533 N 0.000
BOTBODRAFT_112907 Botryobasidium botryosum BOTBODRAFT_112907 N 0.000
BOTBODRAFT_27262 Botryobasidium botryosum BOTBODRAFT_27262 N 0.000
CERSUDRAFT_109864 Ceriporiopsis subvermispora CERSUDRAFT_109864 N 0.000
CERSUDRAFT_114830 Ceriporiopsis subvermispora CERSUDRAFT_114830 N 0.000
CERSUDRAFT_115065 Ceriporiopsis subvermispora CERSUDRAFT_115065 N 0.000
CC1G_03731 Coprinopsis cinerea CC1G_03731 N 0.000
CC1G_08665 Coprinopsis cinerea CC1G_08665 N 0.000
L804_03638 Cryptococcus gattii L804_03638 N 0.000
CNG02270 Cryptococcus neoformans CNG02270 N 0.000
DICSQDRAFT_14849 Dichomitus squalens DICSQDRAFT_14849 N 0.000
FIBRA_07597 Fibroporia radiculosa FIBRA_07597 N 0.000
FOMPIDRAFT_1033652 Fomitopsis pinicola FOMPIDRAFT_1033652 N 0.000
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N 0.000
FOMPIDRAFT_1145789 Fomitopsis pinicola FOMPIDRAFT_1145789 N 0.000
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N 0.000
GALMADRAFT_246744 Galerina marginata GALMADRAFT_246744 N 0.000
GLOTRDRAFT_112363 Gloeophyllum trabeum GLOTRDRAFT_112363 N 0.000
M413DRAFT_237712 Hebeloma cylindrosporum M413DRAFT_237712 N 0.000
M413DRAFT_216932 Hebeloma cylindrosporum M413DRAFT_216932 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000
estExt_fgenesh3_kg.C_80174 Heterobasidion annosum estExt_fgenesh3_kg.C_80174 N 0.000
HETIRDRAFT_181137 Heterobasidion irregulare HETIRDRAFT_181137 N 0.000
HETIRDRAFT_147959 Heterobasidion irregulare HETIRDRAFT_147959 N 0.000
JAAARDRAFT_209121 Jaapia argillacea JAAARDRAFT_209121 N 0.000
JAAARDRAFT_288915 Jaapia argillacea JAAARDRAFT_288915 N 0.000
K443DRAFT_676063 Laccaria amethystina K443DRAFT_676063 N 0.000
LACBIDRAFT_300881 Laccaria bicolor LACBIDRAFT_300881 N 0.000
MVLG_00837 Microbotryum violaceum MVLG_00837 N 0.000
Moror_572 Moniliophthora roreri Moror_572 N 0.000
Moror_346 Moniliophthora roreri Moror_346 N 0.000
Moror_1174 Moniliophthora roreri Moror_1174 N 0.000
PAXRUDRAFT_15625 Paxillus rubicundulus PAXRUDRAFT_15625 N 0.000
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N 0.000
PHACADRAFT_83199 Phanerochaete carnosa PHACADRAFT_83199 N 0.000
e_gww2.5.562.1 Phanerochaete chrysosporium e_gww2.5.562.1 N 0.000
e_gww2.7.722.1 Phanerochaete chrysosporium e_gww2.7.722.1 N 0.000
PHLGIDRAFT_16085 Phlebiopsis gigantea PHLGIDRAFT_16085 N 0.000
PHLGIDRAFT_451232 Phlebiopsis gigantea PHLGIDRAFT_451232 N 0.000
estExt_fgeneshPB_pg.C_140262 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_140262 N 0.000
e_gw1.21.198.1 Phycomyces blakesleeanus e_gw1.21.198.1 N 0.000
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N 0.000
PIIN_04027 Piriformospora indica PIIN_04027 N 0.000
PISMIDRAFT_283095 Pisolithus microcarpus PISMIDRAFT_283095 N 0.000
PISMIDRAFT_650733 Pisolithus microcarpus PISMIDRAFT_650733 N 0.000
M404DRAFT_998133 Pisolithus tinctorius M404DRAFT_998133 N 0.000
M404DRAFT_1002106 Pisolithus tinctorius M404DRAFT_1002106 N 0.000
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N 0.000
POSPLDRAFT_135054 Postia placenta POSPLDRAFT_135054 N 0.000
POSPLDRAFT_135057 Postia placenta POSPLDRAFT_135057 N 0.000
POSPLDRAFT_135062 Postia placenta POSPLDRAFT_135062 N 0.000
V565_046740 Rhizoctonia solani V565_046740 N 0.000
SCHCODRAFT_269947 Schizophyllum commune SCHCODRAFT_269947 N 0.000
SCLCIDRAFT_1225180 Scleroderma citrinum SCLCIDRAFT_1225180 N 0.000
SCLCIDRAFT_36428 Scleroderma citrinum SCLCIDRAFT_36428 N 0.000
SERLA73DRAFT_176212 Serpula lacrymans SERLA73DRAFT_176212 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
M422DRAFT_29892 Sphaerobolus stellatus M422DRAFT_29892 N 0.000
CY34DRAFT_31562 Suillus luteus CY34DRAFT_31562 N 0.000
CY34DRAFT_809277 Suillus luteus CY34DRAFT_809277 N 0.000
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N 0.000
gw1.8.218.1 Tremella mesenterica gw1.8.218.1 N 0.000
A1Q1_01999 Trichosporon asahii A1Q1_01999 N 0.000